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Development and characterization of microsatellite primers in the endangered Mediterranean shrub Ziziphus lotus (Rhamnaceae)(1)
PREMISE OF THE STUDY: Microsatellite primers were developed to characterize and evaluate patterns of genetic diversity and structure in the endangered Mediterranean shrub Ziziphus lotus (Rhamnaceae). METHODS AND RESULTS: Twenty microsatellite primers were developed for Z. lotus, of which 14 were pol...
Autores principales: | , , , , , , , , , |
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Formato: | Online Artículo Texto |
Lenguaje: | English |
Publicado: |
Botanical Society of America
2016
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Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC5238701/ https://www.ncbi.nlm.nih.gov/pubmed/28101436 http://dx.doi.org/10.3732/apps.1600092 |
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author | González-Robles, Ana Manzaneda, Antonio J. Bastida, Jesús M. Harvey, Nick Jaime, Rafael Salido, Teresa Martínez, Luisa M. Fernández-Ocaña, Ana Alcántara, Julio M. Rey, Pedro J. |
author_facet | González-Robles, Ana Manzaneda, Antonio J. Bastida, Jesús M. Harvey, Nick Jaime, Rafael Salido, Teresa Martínez, Luisa M. Fernández-Ocaña, Ana Alcántara, Julio M. Rey, Pedro J. |
author_sort | González-Robles, Ana |
collection | PubMed |
description | PREMISE OF THE STUDY: Microsatellite primers were developed to characterize and evaluate patterns of genetic diversity and structure in the endangered Mediterranean shrub Ziziphus lotus (Rhamnaceae). METHODS AND RESULTS: Twenty microsatellite primers were developed for Z. lotus, of which 14 were polymorphic. We evaluated microsatellite polymorphism in 97 specimens from 18 Spanish and seven Moroccan populations. Between two and eight alleles were found per locus, and the average number of alleles was 5.54. Observed heterozygosity and expected heterozygosity ranged from 0.08 to 0.90 and from 0.08 to 0.82, respectively. Nine of these primers also amplified microsatellite loci in Z. jujuba. CONCLUSIONS: The microsatellite markers described here will be useful in studies on genetic variation, population genetic structure, and gene flow in the fragmented habitat of this species. These markers are a valuable resource for designing appropriate conservation measures for the species in the Mediterranean range. |
format | Online Article Text |
id | pubmed-5238701 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2016 |
publisher | Botanical Society of America |
record_format | MEDLINE/PubMed |
spelling | pubmed-52387012017-01-18 Development and characterization of microsatellite primers in the endangered Mediterranean shrub Ziziphus lotus (Rhamnaceae)(1) González-Robles, Ana Manzaneda, Antonio J. Bastida, Jesús M. Harvey, Nick Jaime, Rafael Salido, Teresa Martínez, Luisa M. Fernández-Ocaña, Ana Alcántara, Julio M. Rey, Pedro J. Appl Plant Sci Primer Note PREMISE OF THE STUDY: Microsatellite primers were developed to characterize and evaluate patterns of genetic diversity and structure in the endangered Mediterranean shrub Ziziphus lotus (Rhamnaceae). METHODS AND RESULTS: Twenty microsatellite primers were developed for Z. lotus, of which 14 were polymorphic. We evaluated microsatellite polymorphism in 97 specimens from 18 Spanish and seven Moroccan populations. Between two and eight alleles were found per locus, and the average number of alleles was 5.54. Observed heterozygosity and expected heterozygosity ranged from 0.08 to 0.90 and from 0.08 to 0.82, respectively. Nine of these primers also amplified microsatellite loci in Z. jujuba. CONCLUSIONS: The microsatellite markers described here will be useful in studies on genetic variation, population genetic structure, and gene flow in the fragmented habitat of this species. These markers are a valuable resource for designing appropriate conservation measures for the species in the Mediterranean range. Botanical Society of America 2016-12-08 /pmc/articles/PMC5238701/ /pubmed/28101436 http://dx.doi.org/10.3732/apps.1600092 Text en © 2016 González-Robles et al. Published by the Botanical Society of America http://creativecommons.org/licenses/by-nc/4.0/ This work is licensed under a Creative Commons Attribution License (CC-BY-NC-SA). |
spellingShingle | Primer Note González-Robles, Ana Manzaneda, Antonio J. Bastida, Jesús M. Harvey, Nick Jaime, Rafael Salido, Teresa Martínez, Luisa M. Fernández-Ocaña, Ana Alcántara, Julio M. Rey, Pedro J. Development and characterization of microsatellite primers in the endangered Mediterranean shrub Ziziphus lotus (Rhamnaceae)(1) |
title | Development and characterization of microsatellite primers in the endangered Mediterranean shrub Ziziphus lotus (Rhamnaceae)(1) |
title_full | Development and characterization of microsatellite primers in the endangered Mediterranean shrub Ziziphus lotus (Rhamnaceae)(1) |
title_fullStr | Development and characterization of microsatellite primers in the endangered Mediterranean shrub Ziziphus lotus (Rhamnaceae)(1) |
title_full_unstemmed | Development and characterization of microsatellite primers in the endangered Mediterranean shrub Ziziphus lotus (Rhamnaceae)(1) |
title_short | Development and characterization of microsatellite primers in the endangered Mediterranean shrub Ziziphus lotus (Rhamnaceae)(1) |
title_sort | development and characterization of microsatellite primers in the endangered mediterranean shrub ziziphus lotus (rhamnaceae)(1) |
topic | Primer Note |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC5238701/ https://www.ncbi.nlm.nih.gov/pubmed/28101436 http://dx.doi.org/10.3732/apps.1600092 |
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