Cargando…

Influence of two bulge loops on the stability of RNA duplexes

Fifty-three RNA duplexes containing two single nucleotide bulge loops were optically melted in 1 M NaCl in order to determine the thermodynamic parameters ΔH°, ΔS°, ΔG°(37), and T(M) for each duplex. Because of the large number of possible combinations and lack of sequence effects observed previousl...

Descripción completa

Detalles Bibliográficos
Autores principales:	Crowther, Claire V., Jones, Laura E., Morelli, Jessica N., Mastrogiacomo, Eric M., Porterfield, Claire, Kent, Jessica L., Serra, Martin J.
Formato:	Online Artículo Texto
Lenguaje:	English
Publicado:	Cold Spring Harbor Laboratory Press 2017
Materias:	Article
Acceso en línea:	https://www.ncbi.nlm.nih.gov/pmc/articles/PMC5238796/ https://www.ncbi.nlm.nih.gov/pubmed/27872162 http://dx.doi.org/10.1261/rna.056168.116

Ejemplares similares

Non-nearest-neighbor dependence of stability for group III RNA single nucleotide bulge loops
por: Kent, Jessica L., et al.
Publicado: (2014)

Improved Model to Predict the Free Energy Contribution of Trinucleotide Bulges to RNA Duplex Stability
por: Murray, Meghan H., et al.
Publicado: (2014)

Duplex formation in a G-quadruplex bulge
por: Ngoc Nguyen, Thi Quynh, et al.
Publicado: (2020)

Cleavage of pyrene-stabilized RNA bulge loops by trans-(±)-cyclohexane-1,2-diamine
por: Patel, Sejal, et al.
Publicado: (2012)

Enhanced RNA cleavage within bulge-loops by an artificial ribonuclease
por: Kuznetsova, Irina L., et al.
Publicado: (2005)

Stability of double-stranded oligonucleotide DNA with a bulged loop: a microarray study
por: Trapp, Christian, et al.
Publicado: (2011)

Determination of the secondary structure of group II bulge loops using the fluorescent probe 2-aminopurine
por: Dishler, Abigael L., et al.
Publicado: (2015)

Thermodynamic examination of 1- to 5-nt purine bulge loops in RNA and DNA constructs
por: Strom, Shane, et al.
Publicado: (2015)

Strict conformational demands of RNA cleavage in bulge-loops created by peptidyl-oligonucleotide conjugates
por: Staroseletz, Yaroslav, et al.
Publicado: (2020)

Knotify+: Toward the Prediction of RNA H-Type Pseudoknots, Including Bulges and Internal Loops
por: Makris, Evangelos, et al.
Publicado: (2023)

Predicting stability of DNA bulge at mononucleotide microsatellite
por: Bae, Jin H, et al.
Publicado: (2021)

“Bind, cleave and leave”: multiple turnover catalysis of RNA cleavage by bulge–loop inducing supramolecular conjugates
por: Amirloo, Bahareh, et al.
Publicado: (2021)

Galactic bulges
por: Laurikainen, Eija, et al.
Publicado: (2016)

Vaginal Bulge
por: Mhayamaguru, Kubwimana M., et al.
Publicado: (2015)

Impact of point-mutations on the hybridization affinity of surface-bound DNA/DNA and RNA/DNA oligonucleotide-duplexes: Comparison of single base mismatches and base bulges
por: Naiser, Thomas, et al.
Publicado: (2008)

DNA models of trinucleotide frameshift deletions: the formation of loops and bulges at the primer–template junction
por: Baase, Walter A., et al.
Publicado: (2009)

The Habitability of the Galactic Bulge
por: Balbi, Amedeo, et al.
Publicado: (2020)

Bulges in nucleic acids
por: Turner, Douglas H
Publicado: (1992)

Commentary: Battle of the bulge
por: Mitzman, Brian
Publicado: (2021)

Random and Natural Non-Coding RNA Have Similar Structural Motif Patterns but Differ in Bulge, Loop, and Bond Counts
por: Ghaddar, Fatme, et al.
Publicado: (2023)

Stability of RNA duplexes containing inosine·cytosine pairs
por: Wright, Daniel J, et al.
Publicado: (2018)

Identification and characterization of two classes of G1 β-bulge
por: Leader, David P., et al.
Publicado: (2021)

Energy Landscapes of Dynamic Ensembles of Rolling Triplet Repeat Bulge Loops: Implications for DNA Expansion Associated with Disease States
por: Völker, Jens, et al.
Publicado: (2012)

Optimization of Duplex Stability and Terminal Asymmetry for shRNA Design
por: Matveeva, Olga V., et al.
Publicado: (2010)

Influence of mismatched and bulged nucleotides on SNP-preferential RNase H cleavage of RNA-antisense gapmer heteroduplexes
por: Magner, Dorota, et al.
Publicado: (2017)

The center, bulge, and disk of the milky way
por: Blitz, Leo
Publicado: (1992)

Bulges in left-handed G-quadruplexes
por: Das, Poulomi, et al.
Publicado: (2021)

Commentary: Battling the bulge: Buckling staphylomas
por: Kumar, Pradeep, et al.
Publicado: (2022)

Bulge, Bubble, and Y: How an RNA Exonuclease Repairs DNA, in Detail
por: Robinson, Richard
Publicado: (2014)

An asymmetric bulge enhances artificial microRNA‐mediated virus resistance
por: Zhang, Hui, et al.
Publicado: (2019)

A microfluidic method to measure bulging heights for bulge testing of polydimethylsiloxane (PDMS) and polyurethane (PU) elastomeric membranes
por: Huang, Jen-Huang, et al.
Publicado: (2018)

The Effect of Central Loops in miRNA:MRE Duplexes on the Efficiency of miRNA-Mediated Gene Regulation
por: Ye, Wenbin, et al.
Publicado: (2008)

Data correction and verification of thermal simulation experiments under the influence of bulging belly
por: Zheng, Bing, et al.
Publicado: (2023)

Aminoglycoside binding to the HIV-1 RNA dimerization initiation site: thermodynamics and effect on the kissing-loop to duplex conversion
por: Bernacchi, Serena, et al.
Publicado: (2007)

Improved siRNA/shRNA Functionality by Mismatched Duplex
por: Wu, Haoquan, et al.
Publicado: (2011)

Stability of mRNA/DNA and DNA/DNA Duplexes Affects mRNA Transcription
por: Kraeva, Rayna I., et al.
Publicado: (2007)

Structure of a DNA G-Quadruplex Related to Osteoporosis with a G-A Bulge Forming a Pseudo-loop
por: Lenarčič Živković, Martina, et al.
Publicado: (2020)

Bulge-Forming miRNases Cleave Oncogenic miRNAs at the Central Loop Region in a Sequence-Specific Manner
por: Patutina, Olga, et al.
Publicado: (2022)

Asymmetric bulges and mismatches determine 20-nt microRNA formation in plants
por: Lee, Wen-Chi, et al.
Publicado: (2015)

Synthesis, purification and crystallization of a putative critical bulge of HAR1 RNA
por: Lares, Monica R.
Publicado: (2019)

Cannot write session to /tmp/vufind_sessions/sess_5sfu2hkn2rj421c5fdrha57psh