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The genome sequence of Barbarea vulgaris facilitates the study of ecological biochemistry
The genus Barbarea has emerged as a model for evolution and ecology of plant defense compounds, due to its unusual glucosinolate profile and production of saponins, unique to the Brassicaceae. One species, B. vulgaris, includes two ‘types’, G-type and P-type that differ in trichome density, and thei...
Autores principales: | , , , , , , , |
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Formato: | Online Artículo Texto |
Lenguaje: | English |
Publicado: |
Nature Publishing Group
2017
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Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC5240624/ https://www.ncbi.nlm.nih.gov/pubmed/28094805 http://dx.doi.org/10.1038/srep40728 |
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author | Byrne, Stephen L. Erthmann, Pernille Østerbye Agerbirk, Niels Bak, Søren Hauser, Thure Pavlo Nagy, Istvan Paina, Cristiana Asp, Torben |
author_facet | Byrne, Stephen L. Erthmann, Pernille Østerbye Agerbirk, Niels Bak, Søren Hauser, Thure Pavlo Nagy, Istvan Paina, Cristiana Asp, Torben |
author_sort | Byrne, Stephen L. |
collection | PubMed |
description | The genus Barbarea has emerged as a model for evolution and ecology of plant defense compounds, due to its unusual glucosinolate profile and production of saponins, unique to the Brassicaceae. One species, B. vulgaris, includes two ‘types’, G-type and P-type that differ in trichome density, and their glucosinolate and saponin profiles. A key difference is the stereochemistry of hydroxylation of their common phenethylglucosinolate backbone, leading to epimeric glucobarbarins. Here we report a draft genome sequence of the G-type, and re-sequencing of the P-type for comparison. This enables us to identify candidate genes underlying glucosinolate diversity, trichome density, and study the genetics of biochemical variation for glucosinolate and saponins. B. vulgaris is resistant to the diamondback moth, and may be exploited for “dead-end” trap cropping where glucosinolates stimulate oviposition and saponins deter larvae to the extent that they die. The B. vulgaris genome will promote the study of mechanisms in ecological biochemistry to benefit crop resistance breeding. |
format | Online Article Text |
id | pubmed-5240624 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2017 |
publisher | Nature Publishing Group |
record_format | MEDLINE/PubMed |
spelling | pubmed-52406242017-01-23 The genome sequence of Barbarea vulgaris facilitates the study of ecological biochemistry Byrne, Stephen L. Erthmann, Pernille Østerbye Agerbirk, Niels Bak, Søren Hauser, Thure Pavlo Nagy, Istvan Paina, Cristiana Asp, Torben Sci Rep Article The genus Barbarea has emerged as a model for evolution and ecology of plant defense compounds, due to its unusual glucosinolate profile and production of saponins, unique to the Brassicaceae. One species, B. vulgaris, includes two ‘types’, G-type and P-type that differ in trichome density, and their glucosinolate and saponin profiles. A key difference is the stereochemistry of hydroxylation of their common phenethylglucosinolate backbone, leading to epimeric glucobarbarins. Here we report a draft genome sequence of the G-type, and re-sequencing of the P-type for comparison. This enables us to identify candidate genes underlying glucosinolate diversity, trichome density, and study the genetics of biochemical variation for glucosinolate and saponins. B. vulgaris is resistant to the diamondback moth, and may be exploited for “dead-end” trap cropping where glucosinolates stimulate oviposition and saponins deter larvae to the extent that they die. The B. vulgaris genome will promote the study of mechanisms in ecological biochemistry to benefit crop resistance breeding. Nature Publishing Group 2017-01-17 /pmc/articles/PMC5240624/ /pubmed/28094805 http://dx.doi.org/10.1038/srep40728 Text en Copyright © 2017, The Author(s) http://creativecommons.org/licenses/by/4.0/ This work is licensed under a Creative Commons Attribution 4.0 International License. The images or other third party material in this article are included in the article’s Creative Commons license, unless indicated otherwise in the credit line; if the material is not included under the Creative Commons license, users will need to obtain permission from the license holder to reproduce the material. To view a copy of this license, visit http://creativecommons.org/licenses/by/4.0/ |
spellingShingle | Article Byrne, Stephen L. Erthmann, Pernille Østerbye Agerbirk, Niels Bak, Søren Hauser, Thure Pavlo Nagy, Istvan Paina, Cristiana Asp, Torben The genome sequence of Barbarea vulgaris facilitates the study of ecological biochemistry |
title | The genome sequence of Barbarea vulgaris facilitates the study of ecological biochemistry |
title_full | The genome sequence of Barbarea vulgaris facilitates the study of ecological biochemistry |
title_fullStr | The genome sequence of Barbarea vulgaris facilitates the study of ecological biochemistry |
title_full_unstemmed | The genome sequence of Barbarea vulgaris facilitates the study of ecological biochemistry |
title_short | The genome sequence of Barbarea vulgaris facilitates the study of ecological biochemistry |
title_sort | genome sequence of barbarea vulgaris facilitates the study of ecological biochemistry |
topic | Article |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC5240624/ https://www.ncbi.nlm.nih.gov/pubmed/28094805 http://dx.doi.org/10.1038/srep40728 |
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