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High quality draft genome sequence of Janthinobacterium psychrotolerans sp. nov., isolated from a frozen freshwater pond

Strain S3-2(T), isolated from sediment of a frozen freshwater pond, shares 99% 16S rRNA gene sequence identity with strains of the genus Janthinobacterium. Strain S3-2(T) is a facultative anaerobe that lacks the ability to produce violacein but shows antibiotic resistance, psychrotolerance, incomple...

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Autores principales: Gong, Xianzhe, Skrivergaard, Stig, Korsgaard, Benjamin Smed, Schreiber, Lars, Marshall, Ian P. G., Finster, Kai, Schramm, Andreas
Formato: Online Artículo Texto
Lenguaje:English
Publicado: BioMed Central 2017
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC5244535/
https://www.ncbi.nlm.nih.gov/pubmed/28116042
http://dx.doi.org/10.1186/s40793-017-0230-x
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author Gong, Xianzhe
Skrivergaard, Stig
Korsgaard, Benjamin Smed
Schreiber, Lars
Marshall, Ian P. G.
Finster, Kai
Schramm, Andreas
author_facet Gong, Xianzhe
Skrivergaard, Stig
Korsgaard, Benjamin Smed
Schreiber, Lars
Marshall, Ian P. G.
Finster, Kai
Schramm, Andreas
author_sort Gong, Xianzhe
collection PubMed
description Strain S3-2(T), isolated from sediment of a frozen freshwater pond, shares 99% 16S rRNA gene sequence identity with strains of the genus Janthinobacterium. Strain S3-2(T) is a facultative anaerobe that lacks the ability to produce violacein but shows antibiotic resistance, psychrotolerance, incomplete denitrification, and fermentation. The draft genome of strain S3-2(T) has a size of ~5.8 Mbp and contains 5,297 genes, including 115 RNA genes. Based on the phenotypic properties of the strain, the low in silico DNA-DNA hybridization (DDH) values with related genomes (<35%), and the low whole genome-based average nucleotide identity (ANI) (<86%) with other strains within the genus Janthinobacterium, we propose that strain S3-2(T) is the type strain (= DSM 102223 = LMG 29653) of a new species within this genus. We propose the name Janthinobacterium psychrotolerans sp. nov. to emphasize the capability of the strain to grow at low temperatures. ELECTRONIC SUPPLEMENTARY MATERIAL: The online version of this article (doi:10.1186/s40793-017-0230-x) contains supplementary material, which is available to authorized users.
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spelling pubmed-52445352017-01-23 High quality draft genome sequence of Janthinobacterium psychrotolerans sp. nov., isolated from a frozen freshwater pond Gong, Xianzhe Skrivergaard, Stig Korsgaard, Benjamin Smed Schreiber, Lars Marshall, Ian P. G. Finster, Kai Schramm, Andreas Stand Genomic Sci Short Genome Report Strain S3-2(T), isolated from sediment of a frozen freshwater pond, shares 99% 16S rRNA gene sequence identity with strains of the genus Janthinobacterium. Strain S3-2(T) is a facultative anaerobe that lacks the ability to produce violacein but shows antibiotic resistance, psychrotolerance, incomplete denitrification, and fermentation. The draft genome of strain S3-2(T) has a size of ~5.8 Mbp and contains 5,297 genes, including 115 RNA genes. Based on the phenotypic properties of the strain, the low in silico DNA-DNA hybridization (DDH) values with related genomes (<35%), and the low whole genome-based average nucleotide identity (ANI) (<86%) with other strains within the genus Janthinobacterium, we propose that strain S3-2(T) is the type strain (= DSM 102223 = LMG 29653) of a new species within this genus. We propose the name Janthinobacterium psychrotolerans sp. nov. to emphasize the capability of the strain to grow at low temperatures. ELECTRONIC SUPPLEMENTARY MATERIAL: The online version of this article (doi:10.1186/s40793-017-0230-x) contains supplementary material, which is available to authorized users. BioMed Central 2017-01-19 /pmc/articles/PMC5244535/ /pubmed/28116042 http://dx.doi.org/10.1186/s40793-017-0230-x Text en © The Author(s). 2016 Open AccessThis article is distributed under the terms of the Creative Commons Attribution 4.0 International License (http://creativecommons.org/licenses/by/4.0/), which permits unrestricted use, distribution, and reproduction in any medium, provided you give appropriate credit to the original author(s) and the source, provide a link to the Creative Commons license, and indicate if changes were made. The Creative Commons Public Domain Dedication waiver (http://creativecommons.org/publicdomain/zero/1.0/) applies to the data made available in this article, unless otherwise stated.
spellingShingle Short Genome Report
Gong, Xianzhe
Skrivergaard, Stig
Korsgaard, Benjamin Smed
Schreiber, Lars
Marshall, Ian P. G.
Finster, Kai
Schramm, Andreas
High quality draft genome sequence of Janthinobacterium psychrotolerans sp. nov., isolated from a frozen freshwater pond
title High quality draft genome sequence of Janthinobacterium psychrotolerans sp. nov., isolated from a frozen freshwater pond
title_full High quality draft genome sequence of Janthinobacterium psychrotolerans sp. nov., isolated from a frozen freshwater pond
title_fullStr High quality draft genome sequence of Janthinobacterium psychrotolerans sp. nov., isolated from a frozen freshwater pond
title_full_unstemmed High quality draft genome sequence of Janthinobacterium psychrotolerans sp. nov., isolated from a frozen freshwater pond
title_short High quality draft genome sequence of Janthinobacterium psychrotolerans sp. nov., isolated from a frozen freshwater pond
title_sort high quality draft genome sequence of janthinobacterium psychrotolerans sp. nov., isolated from a frozen freshwater pond
topic Short Genome Report
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC5244535/
https://www.ncbi.nlm.nih.gov/pubmed/28116042
http://dx.doi.org/10.1186/s40793-017-0230-x
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