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High quality draft genome sequence of Janthinobacterium psychrotolerans sp. nov., isolated from a frozen freshwater pond
Strain S3-2(T), isolated from sediment of a frozen freshwater pond, shares 99% 16S rRNA gene sequence identity with strains of the genus Janthinobacterium. Strain S3-2(T) is a facultative anaerobe that lacks the ability to produce violacein but shows antibiotic resistance, psychrotolerance, incomple...
Autores principales: | , , , , , , |
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Formato: | Online Artículo Texto |
Lenguaje: | English |
Publicado: |
BioMed Central
2017
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Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC5244535/ https://www.ncbi.nlm.nih.gov/pubmed/28116042 http://dx.doi.org/10.1186/s40793-017-0230-x |
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author | Gong, Xianzhe Skrivergaard, Stig Korsgaard, Benjamin Smed Schreiber, Lars Marshall, Ian P. G. Finster, Kai Schramm, Andreas |
author_facet | Gong, Xianzhe Skrivergaard, Stig Korsgaard, Benjamin Smed Schreiber, Lars Marshall, Ian P. G. Finster, Kai Schramm, Andreas |
author_sort | Gong, Xianzhe |
collection | PubMed |
description | Strain S3-2(T), isolated from sediment of a frozen freshwater pond, shares 99% 16S rRNA gene sequence identity with strains of the genus Janthinobacterium. Strain S3-2(T) is a facultative anaerobe that lacks the ability to produce violacein but shows antibiotic resistance, psychrotolerance, incomplete denitrification, and fermentation. The draft genome of strain S3-2(T) has a size of ~5.8 Mbp and contains 5,297 genes, including 115 RNA genes. Based on the phenotypic properties of the strain, the low in silico DNA-DNA hybridization (DDH) values with related genomes (<35%), and the low whole genome-based average nucleotide identity (ANI) (<86%) with other strains within the genus Janthinobacterium, we propose that strain S3-2(T) is the type strain (= DSM 102223 = LMG 29653) of a new species within this genus. We propose the name Janthinobacterium psychrotolerans sp. nov. to emphasize the capability of the strain to grow at low temperatures. ELECTRONIC SUPPLEMENTARY MATERIAL: The online version of this article (doi:10.1186/s40793-017-0230-x) contains supplementary material, which is available to authorized users. |
format | Online Article Text |
id | pubmed-5244535 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2017 |
publisher | BioMed Central |
record_format | MEDLINE/PubMed |
spelling | pubmed-52445352017-01-23 High quality draft genome sequence of Janthinobacterium psychrotolerans sp. nov., isolated from a frozen freshwater pond Gong, Xianzhe Skrivergaard, Stig Korsgaard, Benjamin Smed Schreiber, Lars Marshall, Ian P. G. Finster, Kai Schramm, Andreas Stand Genomic Sci Short Genome Report Strain S3-2(T), isolated from sediment of a frozen freshwater pond, shares 99% 16S rRNA gene sequence identity with strains of the genus Janthinobacterium. Strain S3-2(T) is a facultative anaerobe that lacks the ability to produce violacein but shows antibiotic resistance, psychrotolerance, incomplete denitrification, and fermentation. The draft genome of strain S3-2(T) has a size of ~5.8 Mbp and contains 5,297 genes, including 115 RNA genes. Based on the phenotypic properties of the strain, the low in silico DNA-DNA hybridization (DDH) values with related genomes (<35%), and the low whole genome-based average nucleotide identity (ANI) (<86%) with other strains within the genus Janthinobacterium, we propose that strain S3-2(T) is the type strain (= DSM 102223 = LMG 29653) of a new species within this genus. We propose the name Janthinobacterium psychrotolerans sp. nov. to emphasize the capability of the strain to grow at low temperatures. ELECTRONIC SUPPLEMENTARY MATERIAL: The online version of this article (doi:10.1186/s40793-017-0230-x) contains supplementary material, which is available to authorized users. BioMed Central 2017-01-19 /pmc/articles/PMC5244535/ /pubmed/28116042 http://dx.doi.org/10.1186/s40793-017-0230-x Text en © The Author(s). 2016 Open AccessThis article is distributed under the terms of the Creative Commons Attribution 4.0 International License (http://creativecommons.org/licenses/by/4.0/), which permits unrestricted use, distribution, and reproduction in any medium, provided you give appropriate credit to the original author(s) and the source, provide a link to the Creative Commons license, and indicate if changes were made. The Creative Commons Public Domain Dedication waiver (http://creativecommons.org/publicdomain/zero/1.0/) applies to the data made available in this article, unless otherwise stated. |
spellingShingle | Short Genome Report Gong, Xianzhe Skrivergaard, Stig Korsgaard, Benjamin Smed Schreiber, Lars Marshall, Ian P. G. Finster, Kai Schramm, Andreas High quality draft genome sequence of Janthinobacterium psychrotolerans sp. nov., isolated from a frozen freshwater pond |
title | High quality draft genome sequence of Janthinobacterium psychrotolerans sp. nov., isolated from a frozen freshwater pond |
title_full | High quality draft genome sequence of Janthinobacterium psychrotolerans sp. nov., isolated from a frozen freshwater pond |
title_fullStr | High quality draft genome sequence of Janthinobacterium psychrotolerans sp. nov., isolated from a frozen freshwater pond |
title_full_unstemmed | High quality draft genome sequence of Janthinobacterium psychrotolerans sp. nov., isolated from a frozen freshwater pond |
title_short | High quality draft genome sequence of Janthinobacterium psychrotolerans sp. nov., isolated from a frozen freshwater pond |
title_sort | high quality draft genome sequence of janthinobacterium psychrotolerans sp. nov., isolated from a frozen freshwater pond |
topic | Short Genome Report |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC5244535/ https://www.ncbi.nlm.nih.gov/pubmed/28116042 http://dx.doi.org/10.1186/s40793-017-0230-x |
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