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Optimality and sub-optimality in a bacterial growth law
Organisms adjust their gene expression to improve fitness in diverse environments. But finding the optimal expression in each environment presents a challenge. We ask how good cells are at finding such optima by studying the control of carbon catabolism genes in Escherichia coli. Bacteria show a gro...
Autores principales: | , , , , , |
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Formato: | Online Artículo Texto |
Lenguaje: | English |
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Nature Publishing Group
2017
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Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC5253639/ https://www.ncbi.nlm.nih.gov/pubmed/28102224 http://dx.doi.org/10.1038/ncomms14123 |
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author | Towbin, Benjamin D. Korem, Yael Bren, Anat Doron, Shany Sorek, Rotem Alon, Uri |
author_facet | Towbin, Benjamin D. Korem, Yael Bren, Anat Doron, Shany Sorek, Rotem Alon, Uri |
author_sort | Towbin, Benjamin D. |
collection | PubMed |
description | Organisms adjust their gene expression to improve fitness in diverse environments. But finding the optimal expression in each environment presents a challenge. We ask how good cells are at finding such optima by studying the control of carbon catabolism genes in Escherichia coli. Bacteria show a growth law: growth rate on different carbon sources declines linearly with the steady-state expression of carbon catabolic genes. We experimentally modulate gene expression to ask if this growth law always maximizes growth rate, as has been suggested by theory. We find that the growth law is optimal in many conditions, including a range of perturbations to lactose uptake, but provides sub-optimal growth on several other carbon sources. Combining theory and experiment, we genetically re-engineer E. coli to make sub-optimal conditions into optimal ones and vice versa. We conclude that the carbon growth law is not always optimal, but represents a practical heuristic that often works but sometimes fails. |
format | Online Article Text |
id | pubmed-5253639 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2017 |
publisher | Nature Publishing Group |
record_format | MEDLINE/PubMed |
spelling | pubmed-52536392017-02-03 Optimality and sub-optimality in a bacterial growth law Towbin, Benjamin D. Korem, Yael Bren, Anat Doron, Shany Sorek, Rotem Alon, Uri Nat Commun Article Organisms adjust their gene expression to improve fitness in diverse environments. But finding the optimal expression in each environment presents a challenge. We ask how good cells are at finding such optima by studying the control of carbon catabolism genes in Escherichia coli. Bacteria show a growth law: growth rate on different carbon sources declines linearly with the steady-state expression of carbon catabolic genes. We experimentally modulate gene expression to ask if this growth law always maximizes growth rate, as has been suggested by theory. We find that the growth law is optimal in many conditions, including a range of perturbations to lactose uptake, but provides sub-optimal growth on several other carbon sources. Combining theory and experiment, we genetically re-engineer E. coli to make sub-optimal conditions into optimal ones and vice versa. We conclude that the carbon growth law is not always optimal, but represents a practical heuristic that often works but sometimes fails. Nature Publishing Group 2017-01-19 /pmc/articles/PMC5253639/ /pubmed/28102224 http://dx.doi.org/10.1038/ncomms14123 Text en Copyright © 2017, The Author(s) http://creativecommons.org/licenses/by/4.0/ This work is licensed under a Creative Commons Attribution 4.0 International License. The images or other third party material in this article are included in the article's Creative Commons license, unless indicated otherwise in the credit line; if the material is not included under the Creative Commons license, users will need to obtain permission from the license holder to reproduce the material. To view a copy of this license, visit http://creativecommons.org/licenses/by/4.0/ |
spellingShingle | Article Towbin, Benjamin D. Korem, Yael Bren, Anat Doron, Shany Sorek, Rotem Alon, Uri Optimality and sub-optimality in a bacterial growth law |
title | Optimality and sub-optimality in a bacterial growth law |
title_full | Optimality and sub-optimality in a bacterial growth law |
title_fullStr | Optimality and sub-optimality in a bacterial growth law |
title_full_unstemmed | Optimality and sub-optimality in a bacterial growth law |
title_short | Optimality and sub-optimality in a bacterial growth law |
title_sort | optimality and sub-optimality in a bacterial growth law |
topic | Article |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC5253639/ https://www.ncbi.nlm.nih.gov/pubmed/28102224 http://dx.doi.org/10.1038/ncomms14123 |
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