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Optimality and sub-optimality in a bacterial growth law

Organisms adjust their gene expression to improve fitness in diverse environments. But finding the optimal expression in each environment presents a challenge. We ask how good cells are at finding such optima by studying the control of carbon catabolism genes in Escherichia coli. Bacteria show a gro...

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Autores principales: Towbin, Benjamin D., Korem, Yael, Bren, Anat, Doron, Shany, Sorek, Rotem, Alon, Uri
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Nature Publishing Group 2017
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC5253639/
https://www.ncbi.nlm.nih.gov/pubmed/28102224
http://dx.doi.org/10.1038/ncomms14123
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author Towbin, Benjamin D.
Korem, Yael
Bren, Anat
Doron, Shany
Sorek, Rotem
Alon, Uri
author_facet Towbin, Benjamin D.
Korem, Yael
Bren, Anat
Doron, Shany
Sorek, Rotem
Alon, Uri
author_sort Towbin, Benjamin D.
collection PubMed
description Organisms adjust their gene expression to improve fitness in diverse environments. But finding the optimal expression in each environment presents a challenge. We ask how good cells are at finding such optima by studying the control of carbon catabolism genes in Escherichia coli. Bacteria show a growth law: growth rate on different carbon sources declines linearly with the steady-state expression of carbon catabolic genes. We experimentally modulate gene expression to ask if this growth law always maximizes growth rate, as has been suggested by theory. We find that the growth law is optimal in many conditions, including a range of perturbations to lactose uptake, but provides sub-optimal growth on several other carbon sources. Combining theory and experiment, we genetically re-engineer E. coli to make sub-optimal conditions into optimal ones and vice versa. We conclude that the carbon growth law is not always optimal, but represents a practical heuristic that often works but sometimes fails.
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spelling pubmed-52536392017-02-03 Optimality and sub-optimality in a bacterial growth law Towbin, Benjamin D. Korem, Yael Bren, Anat Doron, Shany Sorek, Rotem Alon, Uri Nat Commun Article Organisms adjust their gene expression to improve fitness in diverse environments. But finding the optimal expression in each environment presents a challenge. We ask how good cells are at finding such optima by studying the control of carbon catabolism genes in Escherichia coli. Bacteria show a growth law: growth rate on different carbon sources declines linearly with the steady-state expression of carbon catabolic genes. We experimentally modulate gene expression to ask if this growth law always maximizes growth rate, as has been suggested by theory. We find that the growth law is optimal in many conditions, including a range of perturbations to lactose uptake, but provides sub-optimal growth on several other carbon sources. Combining theory and experiment, we genetically re-engineer E. coli to make sub-optimal conditions into optimal ones and vice versa. We conclude that the carbon growth law is not always optimal, but represents a practical heuristic that often works but sometimes fails. Nature Publishing Group 2017-01-19 /pmc/articles/PMC5253639/ /pubmed/28102224 http://dx.doi.org/10.1038/ncomms14123 Text en Copyright © 2017, The Author(s) http://creativecommons.org/licenses/by/4.0/ This work is licensed under a Creative Commons Attribution 4.0 International License. The images or other third party material in this article are included in the article's Creative Commons license, unless indicated otherwise in the credit line; if the material is not included under the Creative Commons license, users will need to obtain permission from the license holder to reproduce the material. To view a copy of this license, visit http://creativecommons.org/licenses/by/4.0/
spellingShingle Article
Towbin, Benjamin D.
Korem, Yael
Bren, Anat
Doron, Shany
Sorek, Rotem
Alon, Uri
Optimality and sub-optimality in a bacterial growth law
title Optimality and sub-optimality in a bacterial growth law
title_full Optimality and sub-optimality in a bacterial growth law
title_fullStr Optimality and sub-optimality in a bacterial growth law
title_full_unstemmed Optimality and sub-optimality in a bacterial growth law
title_short Optimality and sub-optimality in a bacterial growth law
title_sort optimality and sub-optimality in a bacterial growth law
topic Article
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC5253639/
https://www.ncbi.nlm.nih.gov/pubmed/28102224
http://dx.doi.org/10.1038/ncomms14123
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