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Thermodynamics of Hydrophobic Amino Acids in Solution: A Combined Experimental–Computational Study

[Image: see text] We present a joint experimental–computational study to quantitatively describe the thermodynamics of hydrophobic leucine amino acids in aqueous solution. X-ray scattering data were acquired at a series of solute and salt concentrations to effectively measure interleucine interactio...

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Autores principales: Song, Lingshuang, Yang, Lin, Meng, Jie, Yang, Sichun
Formato: Online Artículo Texto
Lenguaje:English
Publicado: American Chemical Society 2016
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC5256481/
https://www.ncbi.nlm.nih.gov/pubmed/28033710
http://dx.doi.org/10.1021/acs.jpclett.6b02673
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author Song, Lingshuang
Yang, Lin
Meng, Jie
Yang, Sichun
author_facet Song, Lingshuang
Yang, Lin
Meng, Jie
Yang, Sichun
author_sort Song, Lingshuang
collection PubMed
description [Image: see text] We present a joint experimental–computational study to quantitatively describe the thermodynamics of hydrophobic leucine amino acids in aqueous solution. X-ray scattering data were acquired at a series of solute and salt concentrations to effectively measure interleucine interactions, indicating that a major scattering peak is observed consistently at q = 0.83 Å(–1). Atomistic molecular dynamics simulations were then performed and compared with the scattering data, achieving high consistency at both small and wider scattering angles (q = 0–1.5 Å(–1)). This experimental–computational consistence enables a first glimpse of the leucine–leucine interacting landscape, where two leucine molecules are aligned mostly in a parallel fashion, as opposed to antiparallel, but also allows us to derive effective leucine–leucine interactions in solution. Collectively, this combined approach of employing experimental scattering and molecular simulation enables quantitative characterization of effective intermolecular interactions of hydrophobic amino acids, critical for protein function and dynamics such as protein folding.
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spelling pubmed-52564812017-12-29 Thermodynamics of Hydrophobic Amino Acids in Solution: A Combined Experimental–Computational Study Song, Lingshuang Yang, Lin Meng, Jie Yang, Sichun J Phys Chem Lett [Image: see text] We present a joint experimental–computational study to quantitatively describe the thermodynamics of hydrophobic leucine amino acids in aqueous solution. X-ray scattering data were acquired at a series of solute and salt concentrations to effectively measure interleucine interactions, indicating that a major scattering peak is observed consistently at q = 0.83 Å(–1). Atomistic molecular dynamics simulations were then performed and compared with the scattering data, achieving high consistency at both small and wider scattering angles (q = 0–1.5 Å(–1)). This experimental–computational consistence enables a first glimpse of the leucine–leucine interacting landscape, where two leucine molecules are aligned mostly in a parallel fashion, as opposed to antiparallel, but also allows us to derive effective leucine–leucine interactions in solution. Collectively, this combined approach of employing experimental scattering and molecular simulation enables quantitative characterization of effective intermolecular interactions of hydrophobic amino acids, critical for protein function and dynamics such as protein folding. American Chemical Society 2016-12-29 2017-01-19 /pmc/articles/PMC5256481/ /pubmed/28033710 http://dx.doi.org/10.1021/acs.jpclett.6b02673 Text en Copyright © 2016 American Chemical Society This is an open access article published under an ACS AuthorChoice License (http://pubs.acs.org/page/policy/authorchoice_termsofuse.html) , which permits copying and redistribution of the article or any adaptations for non-commercial purposes.
spellingShingle Song, Lingshuang
Yang, Lin
Meng, Jie
Yang, Sichun
Thermodynamics of Hydrophobic Amino Acids in Solution: A Combined Experimental–Computational Study
title Thermodynamics of Hydrophobic Amino Acids in Solution: A Combined Experimental–Computational Study
title_full Thermodynamics of Hydrophobic Amino Acids in Solution: A Combined Experimental–Computational Study
title_fullStr Thermodynamics of Hydrophobic Amino Acids in Solution: A Combined Experimental–Computational Study
title_full_unstemmed Thermodynamics of Hydrophobic Amino Acids in Solution: A Combined Experimental–Computational Study
title_short Thermodynamics of Hydrophobic Amino Acids in Solution: A Combined Experimental–Computational Study
title_sort thermodynamics of hydrophobic amino acids in solution: a combined experimental–computational study
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC5256481/
https://www.ncbi.nlm.nih.gov/pubmed/28033710
http://dx.doi.org/10.1021/acs.jpclett.6b02673
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