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Thermodynamics of Hydrophobic Amino Acids in Solution: A Combined Experimental–Computational Study
[Image: see text] We present a joint experimental–computational study to quantitatively describe the thermodynamics of hydrophobic leucine amino acids in aqueous solution. X-ray scattering data were acquired at a series of solute and salt concentrations to effectively measure interleucine interactio...
Autores principales: | , , , |
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Formato: | Online Artículo Texto |
Lenguaje: | English |
Publicado: |
American Chemical
Society
2016
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Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC5256481/ https://www.ncbi.nlm.nih.gov/pubmed/28033710 http://dx.doi.org/10.1021/acs.jpclett.6b02673 |
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author | Song, Lingshuang Yang, Lin Meng, Jie Yang, Sichun |
author_facet | Song, Lingshuang Yang, Lin Meng, Jie Yang, Sichun |
author_sort | Song, Lingshuang |
collection | PubMed |
description | [Image: see text] We present a joint experimental–computational study to quantitatively describe the thermodynamics of hydrophobic leucine amino acids in aqueous solution. X-ray scattering data were acquired at a series of solute and salt concentrations to effectively measure interleucine interactions, indicating that a major scattering peak is observed consistently at q = 0.83 Å(–1). Atomistic molecular dynamics simulations were then performed and compared with the scattering data, achieving high consistency at both small and wider scattering angles (q = 0–1.5 Å(–1)). This experimental–computational consistence enables a first glimpse of the leucine–leucine interacting landscape, where two leucine molecules are aligned mostly in a parallel fashion, as opposed to antiparallel, but also allows us to derive effective leucine–leucine interactions in solution. Collectively, this combined approach of employing experimental scattering and molecular simulation enables quantitative characterization of effective intermolecular interactions of hydrophobic amino acids, critical for protein function and dynamics such as protein folding. |
format | Online Article Text |
id | pubmed-5256481 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2016 |
publisher | American Chemical
Society |
record_format | MEDLINE/PubMed |
spelling | pubmed-52564812017-12-29 Thermodynamics of Hydrophobic Amino Acids in Solution: A Combined Experimental–Computational Study Song, Lingshuang Yang, Lin Meng, Jie Yang, Sichun J Phys Chem Lett [Image: see text] We present a joint experimental–computational study to quantitatively describe the thermodynamics of hydrophobic leucine amino acids in aqueous solution. X-ray scattering data were acquired at a series of solute and salt concentrations to effectively measure interleucine interactions, indicating that a major scattering peak is observed consistently at q = 0.83 Å(–1). Atomistic molecular dynamics simulations were then performed and compared with the scattering data, achieving high consistency at both small and wider scattering angles (q = 0–1.5 Å(–1)). This experimental–computational consistence enables a first glimpse of the leucine–leucine interacting landscape, where two leucine molecules are aligned mostly in a parallel fashion, as opposed to antiparallel, but also allows us to derive effective leucine–leucine interactions in solution. Collectively, this combined approach of employing experimental scattering and molecular simulation enables quantitative characterization of effective intermolecular interactions of hydrophobic amino acids, critical for protein function and dynamics such as protein folding. American Chemical Society 2016-12-29 2017-01-19 /pmc/articles/PMC5256481/ /pubmed/28033710 http://dx.doi.org/10.1021/acs.jpclett.6b02673 Text en Copyright © 2016 American Chemical Society This is an open access article published under an ACS AuthorChoice License (http://pubs.acs.org/page/policy/authorchoice_termsofuse.html) , which permits copying and redistribution of the article or any adaptations for non-commercial purposes. |
spellingShingle | Song, Lingshuang Yang, Lin Meng, Jie Yang, Sichun Thermodynamics of Hydrophobic Amino Acids in Solution: A Combined Experimental–Computational Study |
title | Thermodynamics of Hydrophobic Amino Acids in Solution:
A Combined Experimental–Computational Study |
title_full | Thermodynamics of Hydrophobic Amino Acids in Solution:
A Combined Experimental–Computational Study |
title_fullStr | Thermodynamics of Hydrophobic Amino Acids in Solution:
A Combined Experimental–Computational Study |
title_full_unstemmed | Thermodynamics of Hydrophobic Amino Acids in Solution:
A Combined Experimental–Computational Study |
title_short | Thermodynamics of Hydrophobic Amino Acids in Solution:
A Combined Experimental–Computational Study |
title_sort | thermodynamics of hydrophobic amino acids in solution:
a combined experimental–computational study |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC5256481/ https://www.ncbi.nlm.nih.gov/pubmed/28033710 http://dx.doi.org/10.1021/acs.jpclett.6b02673 |
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