Draft genome sequence of Arthrobacter sp. strain B6 isolated from the high-arsenic sediments in Datong Basin, China

Arthrobacter sp. B6 is a Gram-positive, non-motile, facultative aerobic bacterium, isolated from the arsenic-contaminated aquifer sediment in the Datong basin, China. This strain displays high resistance to arsenic, and can dynamically transform arsenic under aerobic condition. Here, we described th...

Descripción completa

Detalles Bibliográficos
Autores principales: Xu, Linghua, Shi, Wanxia, Zeng, Xian-Chun, Yang, Ye, Zhou, Lingli, Mu, Yao, Liu, Yichen
Formato: Online Artículo Texto
Lenguaje:English
Publicado: BioMed Central 2017
Materias:
Short Genome Report
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC5259909/
https://www.ncbi.nlm.nih.gov/pubmed/28138355
http://dx.doi.org/10.1186/s40793-017-0231-9
_version_ 1782499300829298688
author Xu, Linghua
Shi, Wanxia
Zeng, Xian-Chun
Yang, Ye
Zhou, Lingli
Mu, Yao
Liu, Yichen
author_facet Xu, Linghua
Shi, Wanxia
Zeng, Xian-Chun
Yang, Ye
Zhou, Lingli
Mu, Yao
Liu, Yichen
author_sort Xu, Linghua
collection PubMed
description Arthrobacter sp. B6 is a Gram-positive, non-motile, facultative aerobic bacterium, isolated from the arsenic-contaminated aquifer sediment in the Datong basin, China. This strain displays high resistance to arsenic, and can dynamically transform arsenic under aerobic condition. Here, we described the high quality draft genome sequence, annotations and the features of Arthrobacter sp. B6. The G + C content of the genome is 64.67%. This strain has a genome size of 4,663,437 bp; the genome is arranged in 8 scaffolds that contain 25 contigs. From the sequences, 3956 protein-coding genes, 264 pseudo genes and 89 tRNA/rRNA-encoding genes were identified. The genome analysis of this strain helps to better understand the mechanism by which the microbe efficiently tolerates arsenic in the arsenic-contaminated environment.
format Online
Article
Text
id pubmed-5259909
institution National Center for Biotechnology Information
language English
publishDate 2017
publisher BioMed Central
record_format MEDLINE/PubMed
spelling pubmed-52599092017-01-30 Draft genome sequence of Arthrobacter sp. strain B6 isolated from the high-arsenic sediments in Datong Basin, China Xu, Linghua Shi, Wanxia Zeng, Xian-Chun Yang, Ye Zhou, Lingli Mu, Yao Liu, Yichen Stand Genomic Sci Short Genome Report Arthrobacter sp. B6 is a Gram-positive, non-motile, facultative aerobic bacterium, isolated from the arsenic-contaminated aquifer sediment in the Datong basin, China. This strain displays high resistance to arsenic, and can dynamically transform arsenic under aerobic condition. Here, we described the high quality draft genome sequence, annotations and the features of Arthrobacter sp. B6. The G + C content of the genome is 64.67%. This strain has a genome size of 4,663,437 bp; the genome is arranged in 8 scaffolds that contain 25 contigs. From the sequences, 3956 protein-coding genes, 264 pseudo genes and 89 tRNA/rRNA-encoding genes were identified. The genome analysis of this strain helps to better understand the mechanism by which the microbe efficiently tolerates arsenic in the arsenic-contaminated environment. BioMed Central 2017-01-23 /pmc/articles/PMC5259909/ /pubmed/28138355 http://dx.doi.org/10.1186/s40793-017-0231-9 Text en © The Author(s). 2017 Open AccessThis article is distributed under the terms of the Creative Commons Attribution 4.0 International License (http://creativecommons.org/licenses/by/4.0/), which permits unrestricted use, distribution, and reproduction in any medium, provided you give appropriate credit to the original author(s) and the source, provide a link to the Creative Commons license, and indicate if changes were made. The Creative Commons Public Domain Dedication waiver (http://creativecommons.org/publicdomain/zero/1.0/) applies to the data made available in this article, unless otherwise stated.
spellingShingle Short Genome Report
Xu, Linghua
Shi, Wanxia
Zeng, Xian-Chun
Yang, Ye
Zhou, Lingli
Mu, Yao
Liu, Yichen
Draft genome sequence of Arthrobacter sp. strain B6 isolated from the high-arsenic sediments in Datong Basin, China
title Draft genome sequence of Arthrobacter sp. strain B6 isolated from the high-arsenic sediments in Datong Basin, China
title_full Draft genome sequence of Arthrobacter sp. strain B6 isolated from the high-arsenic sediments in Datong Basin, China
title_fullStr Draft genome sequence of Arthrobacter sp. strain B6 isolated from the high-arsenic sediments in Datong Basin, China
title_full_unstemmed Draft genome sequence of Arthrobacter sp. strain B6 isolated from the high-arsenic sediments in Datong Basin, China
title_short Draft genome sequence of Arthrobacter sp. strain B6 isolated from the high-arsenic sediments in Datong Basin, China
title_sort draft genome sequence of arthrobacter sp. strain b6 isolated from the high-arsenic sediments in datong basin, china
topic Short Genome Report
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC5259909/
https://www.ncbi.nlm.nih.gov/pubmed/28138355
http://dx.doi.org/10.1186/s40793-017-0231-9
work_keys_str_mv AT xulinghua draftgenomesequenceofarthrobacterspstrainb6isolatedfromthehigharsenicsedimentsindatongbasinchina
AT shiwanxia draftgenomesequenceofarthrobacterspstrainb6isolatedfromthehigharsenicsedimentsindatongbasinchina
AT zengxianchun draftgenomesequenceofarthrobacterspstrainb6isolatedfromthehigharsenicsedimentsindatongbasinchina
AT yangye draftgenomesequenceofarthrobacterspstrainb6isolatedfromthehigharsenicsedimentsindatongbasinchina
AT zhoulingli draftgenomesequenceofarthrobacterspstrainb6isolatedfromthehigharsenicsedimentsindatongbasinchina
AT muyao draftgenomesequenceofarthrobacterspstrainb6isolatedfromthehigharsenicsedimentsindatongbasinchina
AT liuyichen draftgenomesequenceofarthrobacterspstrainb6isolatedfromthehigharsenicsedimentsindatongbasinchina

Ejemplares similares