Cargando…

An improved method for functional similarity analysis of genes based on Gene Ontology

BACKGROUND: Measures of gene functional similarity are essential tools for gene clustering, gene function prediction, evaluation of protein-protein interaction, disease gene prioritization and other applications. In recent years, many gene functional similarity methods have been proposed based on th...

Descripción completa

Detalles Bibliográficos
Autores principales:	Tian, Zhen, Wang, Chunyu, Guo, Maozu, Liu, Xiaoyan, Teng, Zhixia
Formato:	Online Artículo Texto
Lenguaje:	English
Publicado:	BioMed Central 2016
Materias:	Research
Acceso en línea:	https://www.ncbi.nlm.nih.gov/pmc/articles/PMC5259995/ https://www.ncbi.nlm.nih.gov/pubmed/28155727 http://dx.doi.org/10.1186/s12918-016-0359-z

Ejemplares similares

SGFSC: speeding the gene functional similarity calculation based on hash tables
por: Tian, Zhen, et al.
Publicado: (2016)

Refine gene functional similarity network based on interaction networks
por: Tian, Zhen, et al.
Publicado: (2017)

eSNPO: An eQTL-based SNP Ontology and SNP functional enrichment analysis platform
por: Li, Jin, et al.
Publicado: (2016)

Constructing an integrated gene similarity network for the identification of disease genes
por: Tian, Zhen, et al.
Publicado: (2017)

Revealing protein functions based on relationships of interacting proteins and GO terms
por: Teng, Zhixia, et al.
Publicado: (2017)

Computational Prediction of Protein Function Based on Weighted Mapping of Domains and GO Terms
por: Teng, Zhixia, et al.
Publicado: (2014)

Gene Ontology Enrichment Improves Performances of Functional Similarity of Genes
por: Liu, Wenting, et al.
Publicado: (2018)

Computational drug repositioning using meta-path-based semantic network analysis
por: Tian, Zhen, et al.
Publicado: (2018)

A Literature Review of Gene Function Prediction by Modeling Gene Ontology
por: Zhao, Yingwen, et al.
Publicado: (2020)

An improved Bayesian network method for reconstructing gene regulatory network based on candidate auto selection
por: Xing, Linlin, et al.
Publicado: (2017)

Mining disease genes using integrated protein–protein interaction and gene–gene co-regulation information
por: Li, Jin, et al.
Publicado: (2015)

A Least Square Method Based Model for Identifying Protein Complexes in Protein-Protein Interaction Network
por: Dai, Qiguo, et al.
Publicado: (2014)

A novel gene functional similarity calculation model by utilizing the specificity of terms and relationships in gene ontology
por: Tian, Zhen, et al.
Publicado: (2022)

A new measure for functional similarity of gene products based on Gene Ontology
por: Schlicker, Andreas, et al.
Publicado: (2006)

Improving the Measurement of Semantic Similarity between Gene Ontology Terms and Gene Products: Insights from an Edge- and IC-Based Hybrid Method
por: Wu, Xiaomei, et al.
Publicado: (2013)

Gene Ontology term overlap as a measure of gene functional similarity
por: Mistry, Meeta, et al.
Publicado: (2008)

Improving disease gene prioritization using the semantic similarity of Gene Ontology terms
por: Schlicker, Andreas, et al.
Publicado: (2010)

An improved method for scoring protein-protein interactions using semantic similarity within the gene ontology
por: Jain, Shobhit, et al.
Publicado: (2010)

From Ontology to Semantic Similarity: Calculation of Ontology-Based Semantic Similarity
por: Gan, Mingxin, et al.
Publicado: (2013)

Functional-Network-Based Gene Set Analysis Using Gene-Ontology
por: Chang, Billy, et al.
Publicado: (2013)

Measuring semantic similarities by combining gene ontology annotations and gene co-function networks
por: Peng, Jiajie, et al.
Publicado: (2015)

NaviGO: interactive tool for visualization and functional similarity and coherence analysis with gene ontology
por: Wei, Qing, et al.
Publicado: (2017)

GOGO: An improved algorithm to measure the semantic similarity between gene ontology terms
por: Zhao, Chenguang, et al.
Publicado: (2018)

Automated Ontological Gene Annotation for Computing Disease Similarity
por: Mathur, Sachin, et al.
Publicado: (2010)

Inferring gene ontologies from pairwise similarity data
por: Kramer, Michael, et al.
Publicado: (2014)

Prediction of microRNAs Associated with Human Diseases Based on Weighted k Most Similar Neighbors
por: Xuan, Ping, et al.
Publicado: (2013)

A relation based measure of semantic similarity for Gene Ontology annotations
por: Sheehan, Brendan, et al.
Publicado: (2008)

A Topology-Based Metric for Measuring Term Similarity in the Gene Ontology
por: Mazandu, Gaston K., et al.
Publicado: (2012)

Gene Regulatory Networks Reconstruction Using the Flooding-Pruning Hill-Climbing Algorithm
por: Xing, Linlin, et al.
Publicado: (2018)

Identifying disease genes using machine learning and gene functional similarities, assessed through Gene Ontology
por: Asif, Muhammad, et al.
Publicado: (2018)

Correction: Prediction of microRNAs Associated with Human Diseases Based on Weighted k Most Similar Neighbors
por: Xuan, Ping, et al.
Publicado: (2013)

Correction: Prediction of microRNAs Associated with Human Diseases Based on Weighted k Most Similar Neighbors
por: Xuan, Ping, et al.
Publicado: (2013)

Improving the measurement of semantic similarity by combining gene ontology and co-functional network: a random walk based approach
por: Peng, Jiajie, et al.
Publicado: (2018)

i6mA-Vote: Cross-Species Identification of DNA N6-Methyladenine Sites in Plant Genomes Based on Ensemble Learning With Voting
por: Teng, Zhixia, et al.
Publicado: (2022)

NAIGO: An Improved Method to Align PPI Networks Based on Gene Ontology and Graphlets
por: Zhu, Lijuan, et al.
Publicado: (2020)

System-Level Insights into the Cellular Interactome of a Non-Model Organism: Inferring, Modelling and Analysing Functional Gene Network of Soybean (Glycine max)
por: Xu, Yungang, et al.
Publicado: (2014)

An integrative approach for measuring semantic similarities using gene ontology
por: Peng , Jiajie, et al.
Publicado: (2014)

TopoICSim: a new semantic similarity measure based on gene ontology
por: Ehsani, Rezvan, et al.
Publicado: (2016)

Cluster analysis of protein array results via similarity of Gene Ontology annotation
por: Wolting, Cheryl, et al.
Publicado: (2006)

Comparative analysis of gene ontology-based semantic similarity measurements for the application of identifying essential proteins
por: Xue, Xiaoli, et al.
Publicado: (2023)

Cannot write session to /tmp/vufind_sessions/sess_q4lk2co0n8i3apapoqko7quesl