Cargando…

Novel Primer Sets for Next Generation Sequencing-Based Analyses of Water Quality

Next generation sequencing (NGS) has rapidly become an invaluable tool for the detection, identification and relative quantification of environmental microorganisms. Here, we demonstrate two new 16S rDNA primer sets, which are compatible with NGS approaches and are primarily for use in water quality...

Descripción completa

Detalles Bibliográficos
Autores principales:	Lee, Elvina, Khurana, Maninder S., Whiteley, Andrew S., Monis, Paul T., Bath, Andrew, Gordon, Cameron, Ryan, Una M., Paparini, Andrea
Formato:	Online Artículo Texto
Lenguaje:	English
Publicado:	Public Library of Science 2017
Materias:	Research Article
Acceso en línea:	https://www.ncbi.nlm.nih.gov/pmc/articles/PMC5261608/ https://www.ncbi.nlm.nih.gov/pubmed/28118368 http://dx.doi.org/10.1371/journal.pone.0170008

Ejemplares similares

Recent insights into the tick microbiome gained through next-generation sequencing
por: Greay, Telleasha L., et al.
Publicado: (2018)

Zoonotic Cryptosporidium Species in Animals Inhabiting Sydney Water Catchments
por: Zahedi, Alireza, et al.
Publicado: (2016)

Increased genetic diversity and prevalence of co-infection with Trypanosoma spp. in koalas (Phascolarctos cinereus) and their ticks identified using next-generation sequencing (NGS)
por: Barbosa, Amanda D., et al.
Publicado: (2017)

Optimus Primer: A PCR enrichment primer design program for next-generation sequencing of human exonic regions
por: Brown, Andrew MK, et al.
Publicado: (2010)

MPD: multiplex primer design for next-generation targeted sequencing
por: Wingo, Thomas S., et al.
Publicado: (2017)

Public health significance of zoonotic Cryptosporidium species in wildlife: Critical insights into better drinking water management
por: Zahedi, Alireza, et al.
Publicado: (2015)

Challenges with Using Primer IDs to Improve Accuracy of Next Generation Sequencing
por: Brodin, Johanna, et al.
Publicado: (2015)

A Primer for Disease Gene Prioritization Using Next-Generation Sequencing Data
por: Wang, Shuoguo, et al.
Publicado: (2013)

A Next-Generation Sequencing Primer—How Does It Work and What Can It Do?
por: Alekseyev, Yuriy O., et al.
Publicado: (2018)

Next generation sequencing and comparative analyses of Xenopus mitogenomes
por: Lloyd, Rhiannon E, et al.
Publicado: (2012)

Theoretical and experimental assessment of degenerate primer tagging in ultra-deep applications of next-generation sequencing
por: Liang, Richard H., et al.
Publicado: (2014)

Orthodontic bond strength with the use of non-aerosol producing bonding primers in lieu of conventional primers: An in vitro evaluation
por: Roy, Shevani, et al.
Publicado: (2022)

Ensuring That Fundamentals of Quantitative Microbiology Are Reflected in Microbial Diversity Analyses Based on Next-Generation Sequencing
por: Schmidt, Philip J., et al.
Publicado: (2022)

Deploying next-generation sequencing in a hospital setting
por: Jorgensen, Lars GT, et al.
Publicado: (2012)

An efficient and cost-effective method for primer-induced nucleotide labeling for massive sequencing on next-generation sequencing platforms
por: Guo, Junjie, et al.
Publicado: (2019)

Development of a Prokaryotic Universal Primer for Simultaneous Analysis of Bacteria and Archaea Using Next-Generation Sequencing
por: Takahashi, Shunsuke, et al.
Publicado: (2014)

Development of microsatellite primers in the protected species Viola elatior (Violaceae) using next-generation sequencing(1)
por: Celik, Mélina, et al.
Publicado: (2015)

BAMClipper: removing primers from alignments to minimize false-negative mutations in amplicon next-generation sequencing
por: Au, Chun Hang, et al.
Publicado: (2017)

A universal primer-independent next-generation sequencing approach for investigations of norovirus outbreaks and novel variants
por: Fonager, Jannik, et al.
Publicado: (2017)

A primer for generating and using transcriptome data and gene sets
por: Cockrum, Chad, et al.
Publicado: (2020)

Wastewater-based epidemiology—surveillance and early detection of waterborne pathogens with a focus on SARS-CoV-2, Cryptosporidium and Giardia
por: Zahedi, Alireza, et al.
Publicado: (2021)

Next-generation sequencing in dermatology
por: King, Andrew D., et al.
Publicado: (2023)

Comparison of DNA Quantification Methods for Next Generation Sequencing
por: Robin, Jérôme D., et al.
Publicado: (2016)

In silico and empirical evaluation of twelve metabarcoding primer sets for insectivorous diet analyses
por: Tournayre, Orianne, et al.
Publicado: (2020)

Comparative analyses of two Geraniaceae transcriptomes using next-generation sequencing
por: Zhang, Jin, et al.
Publicado: (2013)

When to use next generation sequencing or diagnostic PCR in diet analyses
por: Rennstam Rubbmark, Oskar, et al.
Publicado: (2019)

Chromosomal analyses of human giant diploid oocytes by next‐generation sequencing
por: Kawano, Hiroomi, et al.
Publicado: (2021)

Bacterial Profiling Reveals Novel “Ca. Neoehrlichia”, Ehrlichia, and Anaplasma Species in Australian Human-Biting Ticks
por: Gofton, Alexander W., et al.
Publicado: (2015)

Illuminating the bacterial microbiome of Australian ticks with 16S and Rickettsia-specific next-generation sequencing
por: Greay, Telleasha L., et al.
Publicado: (2021)

Evaluation of general 16S ribosomal RNA gene PCR primers for classical and next-generation sequencing-based diversity studies
por: Klindworth, Anna, et al.
Publicado: (2013)

An Improved Barcoded Oligonucleotide Primers-based Next-generation Sequencing Approach for Direct Identification of Viral Pathogens in Clinical Specimens
por: WANG, Chun Hua, et al.
Publicado: (2017)

Comparison of 16S rRNA Gene Based Microbial Profiling Using Five Next-Generation Sequencers and Various Primers
por: Park, Changwoo, et al.
Publicado: (2021)

A new rhesus macaque assembly and annotation for next-generation sequencing analyses
por: Zimin, Aleksey V, et al.
Publicado: (2014)

Analyses of MYMIV-induced transcriptome in Vigna mungo as revealed by next generation sequencing
por: Ganguli, Sayak, et al.
Publicado: (2016)

Genetic analyses of early-onset Alzheimer’s disease using next generation sequencing
por: Giau, Vo Van, et al.
Publicado: (2019)

Comparative analyses of error handling strategies for next-generation sequencing in precision medicine
por: F. Löchel, Hannah, et al.
Publicado: (2020)

Molecular and pathological analyses of gastric stump cancer by next-generation sequencing and immunohistochemistry
por: Watanabe, Masahiro, et al.
Publicado: (2021)

Setting a Standard for Chemistry Education in the Next Generation: A Retrosynthetic Analysis
por: Rushton, Gregory T., et al.
Publicado: (2016)

Single primer isothermal amplification (SPIA) combined with next generation sequencing provides complete bovine coronavirus genome coverage and higher sequence depth compared to sequence-independent single primer amplification (SISPA)
por: Myrmel, Mette, et al.
Publicado: (2017)

Overview of Genomic Tools for Circular Visualization in the Next-generation Genomic Sequencing Era
por: Parveen, Alisha, et al.
Publicado: (2019)

Cannot write session to /tmp/vufind_sessions/sess_56mkh068ogia36ph8r87ftp9nh