Cargando…

Balance Trees Reveal Microbial Niche Differentiation

Advances in sequencing technologies have enabled novel insights into microbial niche differentiation, from analyzing environmental samples to understanding human diseases and informing dietary studies. However, identifying the microbial taxa that differentiate these samples can be challenging. These...

Descripción completa

Detalles Bibliográficos
Autores principales:	Morton, James T., Sanders, Jon, Quinn, Robert A., McDonald, Daniel, Gonzalez, Antonio, Vázquez-Baeza, Yoshiki, Navas-Molina, Jose A., Song, Se Jin, Metcalf, Jessica L., Hyde, Embriette R., Lladser, Manuel, Dorrestein, Pieter C., Knight, Rob
Formato:	Online Artículo Texto
Lenguaje:	English
Publicado:	American Society for Microbiology 2017
Materias:	Research Article
Acceso en línea:	https://www.ncbi.nlm.nih.gov/pmc/articles/PMC5264246/ https://www.ncbi.nlm.nih.gov/pubmed/28144630 http://dx.doi.org/10.1128/mSystems.00162-16

Ejemplares similares

Correcting for Microbial Blooms in Fecal Samples during Room-Temperature Shipping
por: Amir, Amnon, et al.
Publicado: (2017)

From Sample to Multi-Omics Conclusions in under 48 Hours
por: Quinn, Robert A., et al.
Publicado: (2016)

Tracking down the sources of experimental contamination in microbiome studies
por: Weiss, Sophie, et al.
Publicado: (2014)

Ribosomal RNA, the lens into life
por: McDonald, Daniel, et al.
Publicado: (2015)

Deblur Rapidly Resolves Single-Nucleotide Community Sequence Patterns
por: Amir, Amnon, et al.
Publicado: (2017)

Niche partitioning of a pathogenic microbiome driven by chemical gradients
por: Quinn, Robert A., et al.
Publicado: (2018)

Normalization and microbial differential abundance strategies depend upon data characteristics
por: Weiss, Sophie, et al.
Publicado: (2017)

EMPress Enables Tree-Guided, Interactive, and Exploratory Analyses of Multi-omic Data Sets
por: Cantrell, Kalen, et al.
Publicado: (2021)

High-Resolution Longitudinal Dynamics of the Cystic Fibrosis Sputum Microbiome and Metabolome through Antibiotic Therapy
por: Raghuvanshi, Ruma, et al.
Publicado: (2020)

Migraines Are Correlated with Higher Levels of Nitrate-, Nitrite-, and Nitric Oxide-Reducing Oral Microbes in the American Gut Project Cohort
por: Gonzalez, Antonio, et al.
Publicado: (2016)

Correction for Gonzalez et al., “Migraines Are Correlated with Higher Levels of Nitrate-, Nitrite-, and Nitric Oxide-Reducing Oral Microbes in the American Gut Project Cohort”
por: Gonzalez, Antonio, et al.
Publicado: (2017)

Qiita: rapid, web-enabled microbiome meta-analysis
por: Gonzalez, Antonio, et al.
Publicado: (2018)

From molecules to dynamic biological communities
por: McDonald, Daniel, et al.
Publicado: (2013)

Learning accurate representations of microbe-metabolite interactions
por: Morton, James T., et al.
Publicado: (2019)

Creating a 3D microbial and chemical snapshot of a human habitat
por: Kapono, Clifford A., et al.
Publicado: (2018)

EMPeror: a tool for visualizing high-throughput microbial community data
por: Vázquez-Baeza, Yoshiki, et al.
Publicado: (2013)

Turning Participatory Microbiome Research into Usable Data: Lessons from the American Gut Project
por: Debelius, Justine W., et al.
Publicado: (2016)

The Oral and Skin Microbiomes of Captive Komodo Dragons Are Significantly Shared with Their Habitat
por: Hyde, Embriette R., et al.
Publicado: (2016)

Tiny microbes, enormous impacts: what matters in gut microbiome studies?
por: Debelius, Justine, et al.
Publicado: (2016)

Molecular and Microbial Microenvironments in Chronically Diseased Lungs Associated with Cystic Fibrosis
por: Melnik, Alexey V., et al.
Publicado: (2019)

Balancing signals in the intestinal niche
por: van Neerven, Sanne M, et al.
Publicado: (2017)

BIOME-Preserve: A novel storage and transport medium for preserving anaerobic microbiota samples for culture recovery
por: Hyde, Embriette R., et al.
Publicado: (2022)

The Gut Microbial Bile Acid Modulation and Its Relevance to Digestive Health and Diseases
por: Fogelson, Kelly A., et al.
Publicado: (2023)

Comparison of methods for estimating the nucleotide substitution matrix
por: Oscamou, Maribeth, et al.
Publicado: (2008)

Context-aware dimensionality reduction deconvolutes gut microbial community dynamics
por: Martino, Cameron, et al.
Publicado: (2020)

A global climate niche for giant trees
por: Scheffer, Marten, et al.
Publicado: (2018)

Uniform Manifold Approximation and Projection (UMAP) Reveals Composite Patterns and Resolves Visualization Artifacts in Microbiome Data
por: Armstrong, George, et al.
Publicado: (2021)

Compositionally Aware Phylogenetic Beta-Diversity Measures Better Resolve Microbiomes Associated with Phenotype
por: Martino, Cameron, et al.
Publicado: (2022)

ghost-tree: creating hybrid-gene phylogenetic trees for diversity analyses
por: Fouquier, Jennifer, et al.
Publicado: (2016)

The Fecal Microbiome and Metabolome of Pitt Hopkins Syndrome, a Severe Autism Spectrum Disorder
por: Dilmore, Amanda H., et al.
Publicado: (2021)

Late successional tree species in Guam create biogeochemical niches
por: Marler, Thomas E.
Publicado: (2019)

Guiding longitudinal sampling in IBD cohorts
por: Vázquez-Baeza, Yoshiki, et al.
Publicado: (2018)

Determination of Effect Sizes for Power Analysis for Microbiome Studies Using Large Microbiome Databases
por: Rahman, Gibraan, et al.
Publicado: (2023)

The unifrac significance test is sensitive to tree topology
por: Lozupone, Catherine A., et al.
Publicado: (2015)

Robust, Universal Tree Balance Indices
por: Lemant, Jeanne, et al.
Publicado: (2022)

American Gut: an Open Platform for Citizen Science Microbiome Research
por: McDonald, Daniel, et al.
Publicado: (2018)

Representing Diet in a Tree-Based Format for Interactive and Exploratory Assessment of Dietary Intake Data
por: Litwin, Nicole, et al.
Publicado: (2022)

Detecting coevolution without phylogenetic trees? Tree-ignorant metrics of coevolution perform as well as tree-aware metrics
por: Caporaso, J Gregory, et al.
Publicado: (2008)

Gastrointestinal Surgery for Inflammatory Bowel Disease Persistently Lowers Microbiome and Metabolome Diversity
por: Fang, Xin, et al.
Publicado: (2020)

Correction for Morton et al., “Uncovering the Horseshoe Effect in Microbial Analyses”
por: Morton, James T., et al.
Publicado: (2018)

Cannot write session to /tmp/vufind_sessions/sess_92nmhag48rotjoa000u25vucs4