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Sequence Analysis of Mitochondrial Genome of Toxascaris leonina from a South China Tiger
Toxascaris leonina is a common parasitic nematode of wild mammals and has significant impacts on the protection of rare wild animals. To analyze population genetic characteristics of T. leonina from South China tiger, its mitochondrial (mt) genome was sequenced. Its complete circular mt genome was 1...
Autores principales: | , , , , , , , , , , |
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Formato: | Online Artículo Texto |
Lenguaje: | English |
Publicado: |
The Korean Society for Parasitology and Tropical Medicine
2016
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Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC5266358/ https://www.ncbi.nlm.nih.gov/pubmed/28095667 http://dx.doi.org/10.3347/kjp.2016.54.6.803 |
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author | Li, Kangxin Yang, Fang Abdullahi, A. Y. Song, Meiran Shi, Xianli Wang, Minwei Fu, Yeqi Pan, Weida Shan, Fang Chen, Wu Li, Guoqing |
author_facet | Li, Kangxin Yang, Fang Abdullahi, A. Y. Song, Meiran Shi, Xianli Wang, Minwei Fu, Yeqi Pan, Weida Shan, Fang Chen, Wu Li, Guoqing |
author_sort | Li, Kangxin |
collection | PubMed |
description | Toxascaris leonina is a common parasitic nematode of wild mammals and has significant impacts on the protection of rare wild animals. To analyze population genetic characteristics of T. leonina from South China tiger, its mitochondrial (mt) genome was sequenced. Its complete circular mt genome was 14,277 bp in length, including 12 protein-coding genes, 22 tRNA genes, 2 rRNA genes, and 2 non-coding regions. The nucleotide composition was biased toward A and T. The most common start codon and stop codon were TTG and TAG, and 4 genes ended with an incomplete stop codon. There were 13 intergenic regions ranging 1 to 10 bp in size. Phylogenetically, T. leonina from a South China tiger was close to canine T. leonina. This study reports for the first time a complete mt genome sequence of T. leonina from the South China tiger, and provides a scientific basis for studying the genetic diversity of nematodes between different hosts. |
format | Online Article Text |
id | pubmed-5266358 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2016 |
publisher | The Korean Society for Parasitology and Tropical Medicine |
record_format | MEDLINE/PubMed |
spelling | pubmed-52663582017-01-26 Sequence Analysis of Mitochondrial Genome of Toxascaris leonina from a South China Tiger Li, Kangxin Yang, Fang Abdullahi, A. Y. Song, Meiran Shi, Xianli Wang, Minwei Fu, Yeqi Pan, Weida Shan, Fang Chen, Wu Li, Guoqing Korean J Parasitol Brief Communication Toxascaris leonina is a common parasitic nematode of wild mammals and has significant impacts on the protection of rare wild animals. To analyze population genetic characteristics of T. leonina from South China tiger, its mitochondrial (mt) genome was sequenced. Its complete circular mt genome was 14,277 bp in length, including 12 protein-coding genes, 22 tRNA genes, 2 rRNA genes, and 2 non-coding regions. The nucleotide composition was biased toward A and T. The most common start codon and stop codon were TTG and TAG, and 4 genes ended with an incomplete stop codon. There were 13 intergenic regions ranging 1 to 10 bp in size. Phylogenetically, T. leonina from a South China tiger was close to canine T. leonina. This study reports for the first time a complete mt genome sequence of T. leonina from the South China tiger, and provides a scientific basis for studying the genetic diversity of nematodes between different hosts. The Korean Society for Parasitology and Tropical Medicine 2016-12 2016-12-31 /pmc/articles/PMC5266358/ /pubmed/28095667 http://dx.doi.org/10.3347/kjp.2016.54.6.803 Text en Copyright © 2016 by The Korean Society for Parasitology and Tropical Medicine This is an Open Access article distributed under the terms of the Creative Commons Attribution Non-Commercial License (http://creativecommons.org/licenses/by-nc/4.0) which permits unrestricted non-commercial use, distribution, and reproduction in any medium, provided the original work is properly cited. |
spellingShingle | Brief Communication Li, Kangxin Yang, Fang Abdullahi, A. Y. Song, Meiran Shi, Xianli Wang, Minwei Fu, Yeqi Pan, Weida Shan, Fang Chen, Wu Li, Guoqing Sequence Analysis of Mitochondrial Genome of Toxascaris leonina from a South China Tiger |
title | Sequence Analysis of Mitochondrial Genome of Toxascaris leonina from a South China Tiger |
title_full | Sequence Analysis of Mitochondrial Genome of Toxascaris leonina from a South China Tiger |
title_fullStr | Sequence Analysis of Mitochondrial Genome of Toxascaris leonina from a South China Tiger |
title_full_unstemmed | Sequence Analysis of Mitochondrial Genome of Toxascaris leonina from a South China Tiger |
title_short | Sequence Analysis of Mitochondrial Genome of Toxascaris leonina from a South China Tiger |
title_sort | sequence analysis of mitochondrial genome of toxascaris leonina from a south china tiger |
topic | Brief Communication |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC5266358/ https://www.ncbi.nlm.nih.gov/pubmed/28095667 http://dx.doi.org/10.3347/kjp.2016.54.6.803 |
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