Genome sequence of a high agarase-producing strain Flammeovirga sp. SJP92

Flammeovirga sp. SJP92 is a Gram-negative, aerobic, rod-shaped, non-motile and non-flagellated strain that belongs to the family Flammeovirgaceae of the class Cytophagia. The strain was isolated from the intestine of abalone, which produces many extracellular agarases and exhibits efficient degradat...

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Autores principales: Dong, Qi, Ruan, Lingwei, Shi, Hong
Formato: Online Artículo Texto
Lenguaje:English
Publicado: BioMed Central 2017
Materias:
Short Genome Report
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC5267422/
https://www.ncbi.nlm.nih.gov/pubmed/28138357
http://dx.doi.org/10.1186/s40793-017-0221-y
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author Dong, Qi
Ruan, Lingwei
Shi, Hong
author_facet Dong, Qi
Ruan, Lingwei
Shi, Hong
author_sort Dong, Qi
collection PubMed
description Flammeovirga sp. SJP92 is a Gram-negative, aerobic, rod-shaped, non-motile and non-flagellated strain that belongs to the family Flammeovirgaceae of the class Cytophagia. The strain was isolated from the intestine of abalone, which produces many extracellular agarases and exhibits efficient degradation activities on various polysaccharides, especially agarose. Here we present the high-quality draft genome of Flammeovirga sp. SJP92, together with its phenotypic characteristics. The genome sequence is 8, 534, 834 bp, which comprised with one chromosome and no plasmid. It contained 6, 291 protein-coding and 99 RNA genes, including 93 tRNA, 5 rRNA and 1 ncRNA genes.
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spelling pubmed-52674222017-01-30 Genome sequence of a high agarase-producing strain Flammeovirga sp. SJP92 Dong, Qi Ruan, Lingwei Shi, Hong Stand Genomic Sci Short Genome Report Flammeovirga sp. SJP92 is a Gram-negative, aerobic, rod-shaped, non-motile and non-flagellated strain that belongs to the family Flammeovirgaceae of the class Cytophagia. The strain was isolated from the intestine of abalone, which produces many extracellular agarases and exhibits efficient degradation activities on various polysaccharides, especially agarose. Here we present the high-quality draft genome of Flammeovirga sp. SJP92, together with its phenotypic characteristics. The genome sequence is 8, 534, 834 bp, which comprised with one chromosome and no plasmid. It contained 6, 291 protein-coding and 99 RNA genes, including 93 tRNA, 5 rRNA and 1 ncRNA genes. BioMed Central 2017-01-26 /pmc/articles/PMC5267422/ /pubmed/28138357 http://dx.doi.org/10.1186/s40793-017-0221-y Text en © The Author(s). 2017 Open AccessThis article is distributed under the terms of the Creative Commons Attribution 4.0 International License (http://creativecommons.org/licenses/by/4.0/), which permits unrestricted use, distribution, and reproduction in any medium, provided you give appropriate credit to the original author(s) and the source, provide a link to the Creative Commons license, and indicate if changes were made. The Creative Commons Public Domain Dedication waiver (http://creativecommons.org/publicdomain/zero/1.0/) applies to the data made available in this article, unless otherwise stated.
spellingShingle Short Genome Report
Dong, Qi
Ruan, Lingwei
Shi, Hong
Genome sequence of a high agarase-producing strain Flammeovirga sp. SJP92
title Genome sequence of a high agarase-producing strain Flammeovirga sp. SJP92
title_full Genome sequence of a high agarase-producing strain Flammeovirga sp. SJP92
title_fullStr Genome sequence of a high agarase-producing strain Flammeovirga sp. SJP92
title_full_unstemmed Genome sequence of a high agarase-producing strain Flammeovirga sp. SJP92
title_short Genome sequence of a high agarase-producing strain Flammeovirga sp. SJP92
title_sort genome sequence of a high agarase-producing strain flammeovirga sp. sjp92
topic Short Genome Report
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC5267422/
https://www.ncbi.nlm.nih.gov/pubmed/28138357
http://dx.doi.org/10.1186/s40793-017-0221-y
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