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High-Throughput Classification of Radiographs Using Deep Convolutional Neural Networks

The study aimed to determine if computer vision techniques rooted in deep learning can use a small set of radiographs to perform clinically relevant image classification with high fidelity. One thousand eight hundred eighty-five chest radiographs on 909 patients obtained between January 2013 and Jul...

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Autores principales: Rajkomar, Alvin, Lingam, Sneha, Taylor, Andrew G., Blum, Michael, Mongan, John
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Springer International Publishing 2016
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC5267603/
https://www.ncbi.nlm.nih.gov/pubmed/27730417
http://dx.doi.org/10.1007/s10278-016-9914-9
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author Rajkomar, Alvin
Lingam, Sneha
Taylor, Andrew G.
Blum, Michael
Mongan, John
author_facet Rajkomar, Alvin
Lingam, Sneha
Taylor, Andrew G.
Blum, Michael
Mongan, John
author_sort Rajkomar, Alvin
collection PubMed
description The study aimed to determine if computer vision techniques rooted in deep learning can use a small set of radiographs to perform clinically relevant image classification with high fidelity. One thousand eight hundred eighty-five chest radiographs on 909 patients obtained between January 2013 and July 2015 at our institution were retrieved and anonymized. The source images were manually annotated as frontal or lateral and randomly divided into training, validation, and test sets. Training and validation sets were augmented to over 150,000 images using standard image manipulations. We then pre-trained a series of deep convolutional networks based on the open-source GoogLeNet with various transformations of the open-source ImageNet (non-radiology) images. These trained networks were then fine-tuned using the original and augmented radiology images. The model with highest validation accuracy was applied to our institutional test set and a publicly available set. Accuracy was assessed by using the Youden Index to set a binary cutoff for frontal or lateral classification. This retrospective study was IRB approved prior to initiation. A network pre-trained on 1.2 million greyscale ImageNet images and fine-tuned on augmented radiographs was chosen. The binary classification method correctly classified 100 % (95 % CI 99.73–100 %) of both our test set and the publicly available images. Classification was rapid, at 38 images per second. A deep convolutional neural network created using non-radiological images, and an augmented set of radiographs is effective in highly accurate classification of chest radiograph view type and is a feasible, rapid method for high-throughput annotation.
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spelling pubmed-52676032017-02-09 High-Throughput Classification of Radiographs Using Deep Convolutional Neural Networks Rajkomar, Alvin Lingam, Sneha Taylor, Andrew G. Blum, Michael Mongan, John J Digit Imaging Article The study aimed to determine if computer vision techniques rooted in deep learning can use a small set of radiographs to perform clinically relevant image classification with high fidelity. One thousand eight hundred eighty-five chest radiographs on 909 patients obtained between January 2013 and July 2015 at our institution were retrieved and anonymized. The source images were manually annotated as frontal or lateral and randomly divided into training, validation, and test sets. Training and validation sets were augmented to over 150,000 images using standard image manipulations. We then pre-trained a series of deep convolutional networks based on the open-source GoogLeNet with various transformations of the open-source ImageNet (non-radiology) images. These trained networks were then fine-tuned using the original and augmented radiology images. The model with highest validation accuracy was applied to our institutional test set and a publicly available set. Accuracy was assessed by using the Youden Index to set a binary cutoff for frontal or lateral classification. This retrospective study was IRB approved prior to initiation. A network pre-trained on 1.2 million greyscale ImageNet images and fine-tuned on augmented radiographs was chosen. The binary classification method correctly classified 100 % (95 % CI 99.73–100 %) of both our test set and the publicly available images. Classification was rapid, at 38 images per second. A deep convolutional neural network created using non-radiological images, and an augmented set of radiographs is effective in highly accurate classification of chest radiograph view type and is a feasible, rapid method for high-throughput annotation. Springer International Publishing 2016-10-11 2017-02 /pmc/articles/PMC5267603/ /pubmed/27730417 http://dx.doi.org/10.1007/s10278-016-9914-9 Text en © The Author(s) 2016 Open Access This article is distributed under the terms of the Creative Commons Attribution 4.0 International License (http://creativecommons.org/licenses/by/4.0/), which permits unrestricted use, distribution, and reproduction in any medium, provided you give appropriate credit to the original author(s) and the source, provide a link to the Creative Commons license, and indicate if changes were made.
spellingShingle Article
Rajkomar, Alvin
Lingam, Sneha
Taylor, Andrew G.
Blum, Michael
Mongan, John
High-Throughput Classification of Radiographs Using Deep Convolutional Neural Networks
title High-Throughput Classification of Radiographs Using Deep Convolutional Neural Networks
title_full High-Throughput Classification of Radiographs Using Deep Convolutional Neural Networks
title_fullStr High-Throughput Classification of Radiographs Using Deep Convolutional Neural Networks
title_full_unstemmed High-Throughput Classification of Radiographs Using Deep Convolutional Neural Networks
title_short High-Throughput Classification of Radiographs Using Deep Convolutional Neural Networks
title_sort high-throughput classification of radiographs using deep convolutional neural networks
topic Article
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC5267603/
https://www.ncbi.nlm.nih.gov/pubmed/27730417
http://dx.doi.org/10.1007/s10278-016-9914-9
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