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A Topological Criterion for Filtering Information in Complex Brain Networks
In many biological systems, the network of interactions between the elements can only be inferred from experimental measurements. In neuroscience, non-invasive imaging tools are extensively used to derive either structural or functional brain networks in-vivo. As a result of the inference process, w...
Autores principales: | , , |
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Formato: | Online Artículo Texto |
Lenguaje: | English |
Publicado: |
Public Library of Science
2017
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Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC5268647/ https://www.ncbi.nlm.nih.gov/pubmed/28076353 http://dx.doi.org/10.1371/journal.pcbi.1005305 |
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author | De Vico Fallani, Fabrizio Latora, Vito Chavez, Mario |
author_facet | De Vico Fallani, Fabrizio Latora, Vito Chavez, Mario |
author_sort | De Vico Fallani, Fabrizio |
collection | PubMed |
description | In many biological systems, the network of interactions between the elements can only be inferred from experimental measurements. In neuroscience, non-invasive imaging tools are extensively used to derive either structural or functional brain networks in-vivo. As a result of the inference process, we obtain a matrix of values corresponding to a fully connected and weighted network. To turn this into a useful sparse network, thresholding is typically adopted to cancel a percentage of the weakest connections. The structural properties of the resulting network depend on how much of the inferred connectivity is eventually retained. However, how to objectively fix this threshold is still an open issue. We introduce a criterion, the efficiency cost optimization (ECO), to select a threshold based on the optimization of the trade-off between the efficiency of a network and its wiring cost. We prove analytically and we confirm through numerical simulations that the connection density maximizing this trade-off emphasizes the intrinsic properties of a given network, while preserving its sparsity. Moreover, this density threshold can be determined a-priori, since the number of connections to filter only depends on the network size according to a power-law. We validate this result on several brain networks, from micro- to macro-scales, obtained with different imaging modalities. Finally, we test the potential of ECO in discriminating brain states with respect to alternative filtering methods. ECO advances our ability to analyze and compare biological networks, inferred from experimental data, in a fast and principled way. |
format | Online Article Text |
id | pubmed-5268647 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2017 |
publisher | Public Library of Science |
record_format | MEDLINE/PubMed |
spelling | pubmed-52686472017-01-31 A Topological Criterion for Filtering Information in Complex Brain Networks De Vico Fallani, Fabrizio Latora, Vito Chavez, Mario PLoS Comput Biol Research Article In many biological systems, the network of interactions between the elements can only be inferred from experimental measurements. In neuroscience, non-invasive imaging tools are extensively used to derive either structural or functional brain networks in-vivo. As a result of the inference process, we obtain a matrix of values corresponding to a fully connected and weighted network. To turn this into a useful sparse network, thresholding is typically adopted to cancel a percentage of the weakest connections. The structural properties of the resulting network depend on how much of the inferred connectivity is eventually retained. However, how to objectively fix this threshold is still an open issue. We introduce a criterion, the efficiency cost optimization (ECO), to select a threshold based on the optimization of the trade-off between the efficiency of a network and its wiring cost. We prove analytically and we confirm through numerical simulations that the connection density maximizing this trade-off emphasizes the intrinsic properties of a given network, while preserving its sparsity. Moreover, this density threshold can be determined a-priori, since the number of connections to filter only depends on the network size according to a power-law. We validate this result on several brain networks, from micro- to macro-scales, obtained with different imaging modalities. Finally, we test the potential of ECO in discriminating brain states with respect to alternative filtering methods. ECO advances our ability to analyze and compare biological networks, inferred from experimental data, in a fast and principled way. Public Library of Science 2017-01-11 /pmc/articles/PMC5268647/ /pubmed/28076353 http://dx.doi.org/10.1371/journal.pcbi.1005305 Text en © 2017 De Vico Fallani et al http://creativecommons.org/licenses/by/4.0/ This is an open access article distributed under the terms of the Creative Commons Attribution License (http://creativecommons.org/licenses/by/4.0/) , which permits unrestricted use, distribution, and reproduction in any medium, provided the original author and source are credited. |
spellingShingle | Research Article De Vico Fallani, Fabrizio Latora, Vito Chavez, Mario A Topological Criterion for Filtering Information in Complex Brain Networks |
title | A Topological Criterion for Filtering Information in Complex Brain Networks |
title_full | A Topological Criterion for Filtering Information in Complex Brain Networks |
title_fullStr | A Topological Criterion for Filtering Information in Complex Brain Networks |
title_full_unstemmed | A Topological Criterion for Filtering Information in Complex Brain Networks |
title_short | A Topological Criterion for Filtering Information in Complex Brain Networks |
title_sort | topological criterion for filtering information in complex brain networks |
topic | Research Article |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC5268647/ https://www.ncbi.nlm.nih.gov/pubmed/28076353 http://dx.doi.org/10.1371/journal.pcbi.1005305 |
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