Cargando…

A Topological Criterion for Filtering Information in Complex Brain Networks

In many biological systems, the network of interactions between the elements can only be inferred from experimental measurements. In neuroscience, non-invasive imaging tools are extensively used to derive either structural or functional brain networks in-vivo. As a result of the inference process, w...

Descripción completa

Detalles Bibliográficos
Autores principales: De Vico Fallani, Fabrizio, Latora, Vito, Chavez, Mario
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Public Library of Science 2017
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC5268647/
https://www.ncbi.nlm.nih.gov/pubmed/28076353
http://dx.doi.org/10.1371/journal.pcbi.1005305
_version_ 1782500854136307712
author De Vico Fallani, Fabrizio
Latora, Vito
Chavez, Mario
author_facet De Vico Fallani, Fabrizio
Latora, Vito
Chavez, Mario
author_sort De Vico Fallani, Fabrizio
collection PubMed
description In many biological systems, the network of interactions between the elements can only be inferred from experimental measurements. In neuroscience, non-invasive imaging tools are extensively used to derive either structural or functional brain networks in-vivo. As a result of the inference process, we obtain a matrix of values corresponding to a fully connected and weighted network. To turn this into a useful sparse network, thresholding is typically adopted to cancel a percentage of the weakest connections. The structural properties of the resulting network depend on how much of the inferred connectivity is eventually retained. However, how to objectively fix this threshold is still an open issue. We introduce a criterion, the efficiency cost optimization (ECO), to select a threshold based on the optimization of the trade-off between the efficiency of a network and its wiring cost. We prove analytically and we confirm through numerical simulations that the connection density maximizing this trade-off emphasizes the intrinsic properties of a given network, while preserving its sparsity. Moreover, this density threshold can be determined a-priori, since the number of connections to filter only depends on the network size according to a power-law. We validate this result on several brain networks, from micro- to macro-scales, obtained with different imaging modalities. Finally, we test the potential of ECO in discriminating brain states with respect to alternative filtering methods. ECO advances our ability to analyze and compare biological networks, inferred from experimental data, in a fast and principled way.
format Online
Article
Text
id pubmed-5268647
institution National Center for Biotechnology Information
language English
publishDate 2017
publisher Public Library of Science
record_format MEDLINE/PubMed
spelling pubmed-52686472017-01-31 A Topological Criterion for Filtering Information in Complex Brain Networks De Vico Fallani, Fabrizio Latora, Vito Chavez, Mario PLoS Comput Biol Research Article In many biological systems, the network of interactions between the elements can only be inferred from experimental measurements. In neuroscience, non-invasive imaging tools are extensively used to derive either structural or functional brain networks in-vivo. As a result of the inference process, we obtain a matrix of values corresponding to a fully connected and weighted network. To turn this into a useful sparse network, thresholding is typically adopted to cancel a percentage of the weakest connections. The structural properties of the resulting network depend on how much of the inferred connectivity is eventually retained. However, how to objectively fix this threshold is still an open issue. We introduce a criterion, the efficiency cost optimization (ECO), to select a threshold based on the optimization of the trade-off between the efficiency of a network and its wiring cost. We prove analytically and we confirm through numerical simulations that the connection density maximizing this trade-off emphasizes the intrinsic properties of a given network, while preserving its sparsity. Moreover, this density threshold can be determined a-priori, since the number of connections to filter only depends on the network size according to a power-law. We validate this result on several brain networks, from micro- to macro-scales, obtained with different imaging modalities. Finally, we test the potential of ECO in discriminating brain states with respect to alternative filtering methods. ECO advances our ability to analyze and compare biological networks, inferred from experimental data, in a fast and principled way. Public Library of Science 2017-01-11 /pmc/articles/PMC5268647/ /pubmed/28076353 http://dx.doi.org/10.1371/journal.pcbi.1005305 Text en © 2017 De Vico Fallani et al http://creativecommons.org/licenses/by/4.0/ This is an open access article distributed under the terms of the Creative Commons Attribution License (http://creativecommons.org/licenses/by/4.0/) , which permits unrestricted use, distribution, and reproduction in any medium, provided the original author and source are credited.
spellingShingle Research Article
De Vico Fallani, Fabrizio
Latora, Vito
Chavez, Mario
A Topological Criterion for Filtering Information in Complex Brain Networks
title A Topological Criterion for Filtering Information in Complex Brain Networks
title_full A Topological Criterion for Filtering Information in Complex Brain Networks
title_fullStr A Topological Criterion for Filtering Information in Complex Brain Networks
title_full_unstemmed A Topological Criterion for Filtering Information in Complex Brain Networks
title_short A Topological Criterion for Filtering Information in Complex Brain Networks
title_sort topological criterion for filtering information in complex brain networks
topic Research Article
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC5268647/
https://www.ncbi.nlm.nih.gov/pubmed/28076353
http://dx.doi.org/10.1371/journal.pcbi.1005305
work_keys_str_mv AT devicofallanifabrizio atopologicalcriterionforfilteringinformationincomplexbrainnetworks
AT latoravito atopologicalcriterionforfilteringinformationincomplexbrainnetworks
AT chavezmario atopologicalcriterionforfilteringinformationincomplexbrainnetworks
AT devicofallanifabrizio topologicalcriterionforfilteringinformationincomplexbrainnetworks
AT latoravito topologicalcriterionforfilteringinformationincomplexbrainnetworks
AT chavezmario topologicalcriterionforfilteringinformationincomplexbrainnetworks