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Decibel: The Relational Dataset Branching System
As scientific endeavors and data analysis become increasingly collaborative, there is a need for data management systems that natively support the versioning or branching of datasets to enable concurrent analysis, cleaning, integration, manipulation, or curation of data across teams of individuals....
Autores principales: | , , , , , |
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Formato: | Online Artículo Texto |
Lenguaje: | English |
Publicado: |
2016
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Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC5278666/ https://www.ncbi.nlm.nih.gov/pubmed/28149668 http://dx.doi.org/10.14778/2947618.2947619 |
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author | Maddox, Michael Goehring, David Elmore, Aaron J. Madden, Samuel Parameswaran, Aditya Deshpande, Amol |
author_facet | Maddox, Michael Goehring, David Elmore, Aaron J. Madden, Samuel Parameswaran, Aditya Deshpande, Amol |
author_sort | Maddox, Michael |
collection | PubMed |
description | As scientific endeavors and data analysis become increasingly collaborative, there is a need for data management systems that natively support the versioning or branching of datasets to enable concurrent analysis, cleaning, integration, manipulation, or curation of data across teams of individuals. Common practice for sharing and collaborating on datasets involves creating or storing multiple copies of the dataset, one for each stage of analysis, with no provenance information tracking the relationships between these datasets. This results not only in wasted storage, but also makes it challenging to track and integrate modifications made by different users to the same dataset. In this paper, we introduce the Relational Dataset Branching System, Decibel, a new relational storage system with built-in version control designed to address these shortcomings. We present our initial design for Decibel and provide a thorough evaluation of three versioned storage engine designs that focus on efficient query processing with minimal storage overhead. We also develop an exhaustive benchmark to enable the rigorous testing of these and future versioned storage engine designs. |
format | Online Article Text |
id | pubmed-5278666 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2016 |
record_format | MEDLINE/PubMed |
spelling | pubmed-52786662017-01-30 Decibel: The Relational Dataset Branching System Maddox, Michael Goehring, David Elmore, Aaron J. Madden, Samuel Parameswaran, Aditya Deshpande, Amol Proceedings VLDB Endowment Article As scientific endeavors and data analysis become increasingly collaborative, there is a need for data management systems that natively support the versioning or branching of datasets to enable concurrent analysis, cleaning, integration, manipulation, or curation of data across teams of individuals. Common practice for sharing and collaborating on datasets involves creating or storing multiple copies of the dataset, one for each stage of analysis, with no provenance information tracking the relationships between these datasets. This results not only in wasted storage, but also makes it challenging to track and integrate modifications made by different users to the same dataset. In this paper, we introduce the Relational Dataset Branching System, Decibel, a new relational storage system with built-in version control designed to address these shortcomings. We present our initial design for Decibel and provide a thorough evaluation of three versioned storage engine designs that focus on efficient query processing with minimal storage overhead. We also develop an exhaustive benchmark to enable the rigorous testing of these and future versioned storage engine designs. 2016-05 /pmc/articles/PMC5278666/ /pubmed/28149668 http://dx.doi.org/10.14778/2947618.2947619 Text en http://creativecommons.org/licenses/by-nc-nd/4.0/ This work is licensed under the Creative Commons Attribution-NonCommercialNoDerivatives 4.0 International License. To view a copy of this license, visit http://creativecommons.org/licenses/by-nc-nd/4.0/.For any use beyond those covered by this license, obtain permission by emailing info@vldb.org. |
spellingShingle | Article Maddox, Michael Goehring, David Elmore, Aaron J. Madden, Samuel Parameswaran, Aditya Deshpande, Amol Decibel: The Relational Dataset Branching System |
title | Decibel: The Relational Dataset Branching System |
title_full | Decibel: The Relational Dataset Branching System |
title_fullStr | Decibel: The Relational Dataset Branching System |
title_full_unstemmed | Decibel: The Relational Dataset Branching System |
title_short | Decibel: The Relational Dataset Branching System |
title_sort | decibel: the relational dataset branching system |
topic | Article |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC5278666/ https://www.ncbi.nlm.nih.gov/pubmed/28149668 http://dx.doi.org/10.14778/2947618.2947619 |
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