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Radiomics of Lung Nodules: A Multi-Institutional Study of Robustness and Agreement of Quantitative Imaging Features
Radiomics is to provide quantitative descriptors of normal and abnormal tissues during classification and prediction tasks in radiology and oncology. Quantitative Imaging Network members are developing radiomic “feature” sets to characterize tumors, in general, the size, shape, texture, intensity, m...
Autores principales: | , , , , , , , , , , , , , , , , , , , |
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Formato: | Online Artículo Texto |
Lenguaje: | English |
Publicado: |
Grapho Publications, LLC
2016
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Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC5279995/ https://www.ncbi.nlm.nih.gov/pubmed/28149958 http://dx.doi.org/10.18383/j.tom.2016.00235 |
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author | Kalpathy-Cramer, Jayashree Mamomov, Artem Zhao, Binsheng Lu, Lin Cherezov, Dmitry Napel, Sandy Echegaray, Sebastian Rubin, Daniel McNitt-Gray, Michael Lo, Pechin Sieren, Jessica C. Uthoff, Johanna Dilger, Samantha K. N. Driscoll, Brandan Yeung, Ivan Hadjiiski, Lubomir Cha, Kenny Balagurunathan, Yoganand Gillies, Robert Goldgof, Dmitry |
author_facet | Kalpathy-Cramer, Jayashree Mamomov, Artem Zhao, Binsheng Lu, Lin Cherezov, Dmitry Napel, Sandy Echegaray, Sebastian Rubin, Daniel McNitt-Gray, Michael Lo, Pechin Sieren, Jessica C. Uthoff, Johanna Dilger, Samantha K. N. Driscoll, Brandan Yeung, Ivan Hadjiiski, Lubomir Cha, Kenny Balagurunathan, Yoganand Gillies, Robert Goldgof, Dmitry |
author_sort | Kalpathy-Cramer, Jayashree |
collection | PubMed |
description | Radiomics is to provide quantitative descriptors of normal and abnormal tissues during classification and prediction tasks in radiology and oncology. Quantitative Imaging Network members are developing radiomic “feature” sets to characterize tumors, in general, the size, shape, texture, intensity, margin, and other aspects of the imaging features of nodules and lesions. Efforts are ongoing for developing an ontology to describe radiomic features for lung nodules, with the main classes consisting of size, local and global shape descriptors, margin, intensity, and texture-based features, which are based on wavelets, Laplacian of Gaussians, Law's features, gray-level co-occurrence matrices, and run-length features. The purpose of this study is to investigate the sensitivity of quantitative descriptors of pulmonary nodules to segmentations and to illustrate comparisons across different feature types and features computed by different implementations of feature extraction algorithms. We calculated the concordance correlation coefficients of the features as a measure of their stability with the underlying segmentation; 68% of the 830 features in this study had a concordance CC of ≥0.75. Pairwise correlation coefficients between pairs of features were used to uncover associations between features, particularly as measured by different participants. A graphical model approach was used to enumerate the number of uncorrelated feature groups at given thresholds of correlation. At a threshold of 0.75 and 0.95, there were 75 and 246 subgroups, respectively, providing a measure for the features' redundancy. |
format | Online Article Text |
id | pubmed-5279995 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2016 |
publisher | Grapho Publications, LLC |
record_format | MEDLINE/PubMed |
spelling | pubmed-52799952017-01-30 Radiomics of Lung Nodules: A Multi-Institutional Study of Robustness and Agreement of Quantitative Imaging Features Kalpathy-Cramer, Jayashree Mamomov, Artem Zhao, Binsheng Lu, Lin Cherezov, Dmitry Napel, Sandy Echegaray, Sebastian Rubin, Daniel McNitt-Gray, Michael Lo, Pechin Sieren, Jessica C. Uthoff, Johanna Dilger, Samantha K. N. Driscoll, Brandan Yeung, Ivan Hadjiiski, Lubomir Cha, Kenny Balagurunathan, Yoganand Gillies, Robert Goldgof, Dmitry Tomography Research Articles Radiomics is to provide quantitative descriptors of normal and abnormal tissues during classification and prediction tasks in radiology and oncology. Quantitative Imaging Network members are developing radiomic “feature” sets to characterize tumors, in general, the size, shape, texture, intensity, margin, and other aspects of the imaging features of nodules and lesions. Efforts are ongoing for developing an ontology to describe radiomic features for lung nodules, with the main classes consisting of size, local and global shape descriptors, margin, intensity, and texture-based features, which are based on wavelets, Laplacian of Gaussians, Law's features, gray-level co-occurrence matrices, and run-length features. The purpose of this study is to investigate the sensitivity of quantitative descriptors of pulmonary nodules to segmentations and to illustrate comparisons across different feature types and features computed by different implementations of feature extraction algorithms. We calculated the concordance correlation coefficients of the features as a measure of their stability with the underlying segmentation; 68% of the 830 features in this study had a concordance CC of ≥0.75. Pairwise correlation coefficients between pairs of features were used to uncover associations between features, particularly as measured by different participants. A graphical model approach was used to enumerate the number of uncorrelated feature groups at given thresholds of correlation. At a threshold of 0.75 and 0.95, there were 75 and 246 subgroups, respectively, providing a measure for the features' redundancy. Grapho Publications, LLC 2016-12 /pmc/articles/PMC5279995/ /pubmed/28149958 http://dx.doi.org/10.18383/j.tom.2016.00235 Text en © 2016 The Authors. Published by Grapho Publications, LLC https://creativecommons.org/licenses/by/4.0/ This is an open access article under the CC BY 4.0 license (https://creativecommons.org/licenses/by/4.0/). |
spellingShingle | Research Articles Kalpathy-Cramer, Jayashree Mamomov, Artem Zhao, Binsheng Lu, Lin Cherezov, Dmitry Napel, Sandy Echegaray, Sebastian Rubin, Daniel McNitt-Gray, Michael Lo, Pechin Sieren, Jessica C. Uthoff, Johanna Dilger, Samantha K. N. Driscoll, Brandan Yeung, Ivan Hadjiiski, Lubomir Cha, Kenny Balagurunathan, Yoganand Gillies, Robert Goldgof, Dmitry Radiomics of Lung Nodules: A Multi-Institutional Study of Robustness and Agreement of Quantitative Imaging Features |
title | Radiomics of Lung Nodules: A Multi-Institutional Study of Robustness and Agreement of Quantitative Imaging Features |
title_full | Radiomics of Lung Nodules: A Multi-Institutional Study of Robustness and Agreement of Quantitative Imaging Features |
title_fullStr | Radiomics of Lung Nodules: A Multi-Institutional Study of Robustness and Agreement of Quantitative Imaging Features |
title_full_unstemmed | Radiomics of Lung Nodules: A Multi-Institutional Study of Robustness and Agreement of Quantitative Imaging Features |
title_short | Radiomics of Lung Nodules: A Multi-Institutional Study of Robustness and Agreement of Quantitative Imaging Features |
title_sort | radiomics of lung nodules: a multi-institutional study of robustness and agreement of quantitative imaging features |
topic | Research Articles |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC5279995/ https://www.ncbi.nlm.nih.gov/pubmed/28149958 http://dx.doi.org/10.18383/j.tom.2016.00235 |
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