Cargando…

Genome-Wide Association Study of Polymorphisms Predisposing to Bronchiolitis

Bronchiolitis is a major cause of hospitalization among infants. Severe bronchiolitis is associated with later asthma, suggesting a common genetic predisposition. Genetic background of bronchiolitis is not well characterized. To identify polymorphisms associated with bronchiolitis, we conducted a ge...

Descripción completa

Detalles Bibliográficos
Autores principales: Pasanen, Anu, Karjalainen, Minna K., Bont, Louis, Piippo-Savolainen, Eija, Ruotsalainen, Marja, Goksör, Emma, Kumawat, Kuldeep, Hodemaekers, Hennie, Nuolivirta, Kirsi, Jartti, Tuomas, Wennergren, Göran, Hallman, Mikko, Rämet, Mika, Korppi, Matti
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Nature Publishing Group 2017
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC5282585/
https://www.ncbi.nlm.nih.gov/pubmed/28139761
http://dx.doi.org/10.1038/srep41653
_version_ 1782503351565418496
author Pasanen, Anu
Karjalainen, Minna K.
Bont, Louis
Piippo-Savolainen, Eija
Ruotsalainen, Marja
Goksör, Emma
Kumawat, Kuldeep
Hodemaekers, Hennie
Nuolivirta, Kirsi
Jartti, Tuomas
Wennergren, Göran
Hallman, Mikko
Rämet, Mika
Korppi, Matti
author_facet Pasanen, Anu
Karjalainen, Minna K.
Bont, Louis
Piippo-Savolainen, Eija
Ruotsalainen, Marja
Goksör, Emma
Kumawat, Kuldeep
Hodemaekers, Hennie
Nuolivirta, Kirsi
Jartti, Tuomas
Wennergren, Göran
Hallman, Mikko
Rämet, Mika
Korppi, Matti
author_sort Pasanen, Anu
collection PubMed
description Bronchiolitis is a major cause of hospitalization among infants. Severe bronchiolitis is associated with later asthma, suggesting a common genetic predisposition. Genetic background of bronchiolitis is not well characterized. To identify polymorphisms associated with bronchiolitis, we conducted a genome-wide association study (GWAS) in which 5,300,000 single nucleotide polymorphisms (SNPs) were tested for association in a Finnish–Swedish population of 217 children hospitalized for bronchiolitis and 778 controls. The most promising SNPs (n = 77) were genotyped in a Dutch replication population of 416 cases and 432 controls. Finally, we used a set of 202 Finnish bronchiolitis cases to further investigate candidate SNPs. We did not detect genome-wide significant associations, but several suggestive association signals (p < 10(−5)) were observed in the GWAS. In the replication population, three SNPs were nominally associated (p < 0.05). Of them, rs269094 was an expression quantitative trait locus (eQTL) for KCND3, previously shown to be associated with occupational asthma. In the additional set of Finnish cases, the association for another SNP (rs9591920) within a noncoding RNA locus was further strengthened. Our results provide a first genome-wide examination of the genetics underlying bronchiolitis. These preliminary findings require further validation in a larger sample size.
format Online
Article
Text
id pubmed-5282585
institution National Center for Biotechnology Information
language English
publishDate 2017
publisher Nature Publishing Group
record_format MEDLINE/PubMed
spelling pubmed-52825852017-02-03 Genome-Wide Association Study of Polymorphisms Predisposing to Bronchiolitis Pasanen, Anu Karjalainen, Minna K. Bont, Louis Piippo-Savolainen, Eija Ruotsalainen, Marja Goksör, Emma Kumawat, Kuldeep Hodemaekers, Hennie Nuolivirta, Kirsi Jartti, Tuomas Wennergren, Göran Hallman, Mikko Rämet, Mika Korppi, Matti Sci Rep Article Bronchiolitis is a major cause of hospitalization among infants. Severe bronchiolitis is associated with later asthma, suggesting a common genetic predisposition. Genetic background of bronchiolitis is not well characterized. To identify polymorphisms associated with bronchiolitis, we conducted a genome-wide association study (GWAS) in which 5,300,000 single nucleotide polymorphisms (SNPs) were tested for association in a Finnish–Swedish population of 217 children hospitalized for bronchiolitis and 778 controls. The most promising SNPs (n = 77) were genotyped in a Dutch replication population of 416 cases and 432 controls. Finally, we used a set of 202 Finnish bronchiolitis cases to further investigate candidate SNPs. We did not detect genome-wide significant associations, but several suggestive association signals (p < 10(−5)) were observed in the GWAS. In the replication population, three SNPs were nominally associated (p < 0.05). Of them, rs269094 was an expression quantitative trait locus (eQTL) for KCND3, previously shown to be associated with occupational asthma. In the additional set of Finnish cases, the association for another SNP (rs9591920) within a noncoding RNA locus was further strengthened. Our results provide a first genome-wide examination of the genetics underlying bronchiolitis. These preliminary findings require further validation in a larger sample size. Nature Publishing Group 2017-01-31 /pmc/articles/PMC5282585/ /pubmed/28139761 http://dx.doi.org/10.1038/srep41653 Text en Copyright © 2017, The Author(s) http://creativecommons.org/licenses/by/4.0/ This work is licensed under a Creative Commons Attribution 4.0 International License. The images or other third party material in this article are included in the article’s Creative Commons license, unless indicated otherwise in the credit line; if the material is not included under the Creative Commons license, users will need to obtain permission from the license holder to reproduce the material. To view a copy of this license, visit http://creativecommons.org/licenses/by/4.0/
spellingShingle Article
Pasanen, Anu
Karjalainen, Minna K.
Bont, Louis
Piippo-Savolainen, Eija
Ruotsalainen, Marja
Goksör, Emma
Kumawat, Kuldeep
Hodemaekers, Hennie
Nuolivirta, Kirsi
Jartti, Tuomas
Wennergren, Göran
Hallman, Mikko
Rämet, Mika
Korppi, Matti
Genome-Wide Association Study of Polymorphisms Predisposing to Bronchiolitis
title Genome-Wide Association Study of Polymorphisms Predisposing to Bronchiolitis
title_full Genome-Wide Association Study of Polymorphisms Predisposing to Bronchiolitis
title_fullStr Genome-Wide Association Study of Polymorphisms Predisposing to Bronchiolitis
title_full_unstemmed Genome-Wide Association Study of Polymorphisms Predisposing to Bronchiolitis
title_short Genome-Wide Association Study of Polymorphisms Predisposing to Bronchiolitis
title_sort genome-wide association study of polymorphisms predisposing to bronchiolitis
topic Article
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC5282585/
https://www.ncbi.nlm.nih.gov/pubmed/28139761
http://dx.doi.org/10.1038/srep41653
work_keys_str_mv AT pasanenanu genomewideassociationstudyofpolymorphismspredisposingtobronchiolitis
AT karjalainenminnak genomewideassociationstudyofpolymorphismspredisposingtobronchiolitis
AT bontlouis genomewideassociationstudyofpolymorphismspredisposingtobronchiolitis
AT piipposavolaineneija genomewideassociationstudyofpolymorphismspredisposingtobronchiolitis
AT ruotsalainenmarja genomewideassociationstudyofpolymorphismspredisposingtobronchiolitis
AT goksoremma genomewideassociationstudyofpolymorphismspredisposingtobronchiolitis
AT kumawatkuldeep genomewideassociationstudyofpolymorphismspredisposingtobronchiolitis
AT hodemaekershennie genomewideassociationstudyofpolymorphismspredisposingtobronchiolitis
AT nuolivirtakirsi genomewideassociationstudyofpolymorphismspredisposingtobronchiolitis
AT jarttituomas genomewideassociationstudyofpolymorphismspredisposingtobronchiolitis
AT wennergrengoran genomewideassociationstudyofpolymorphismspredisposingtobronchiolitis
AT hallmanmikko genomewideassociationstudyofpolymorphismspredisposingtobronchiolitis
AT rametmika genomewideassociationstudyofpolymorphismspredisposingtobronchiolitis
AT korppimatti genomewideassociationstudyofpolymorphismspredisposingtobronchiolitis