Cargando…
Metabox: A Toolbox for Metabolomic Data Analysis, Interpretation and Integrative Exploration
Similar to genomic and proteomic platforms, metabolomic data acquisition and analysis is becoming a routine approach for investigating biological systems. However, computational approaches for metabolomic data analysis and integration are still maturing. Metabox is a bioinformatics toolbox for deep...
Autores principales: | , , , , |
---|---|
Formato: | Online Artículo Texto |
Lenguaje: | English |
Publicado: |
Public Library of Science
2017
|
Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC5283729/ https://www.ncbi.nlm.nih.gov/pubmed/28141874 http://dx.doi.org/10.1371/journal.pone.0171046 |
_version_ | 1782503540452753408 |
---|---|
author | Wanichthanarak, Kwanjeera Fan, Sili Grapov, Dmitry Barupal, Dinesh Kumar Fiehn, Oliver |
author_facet | Wanichthanarak, Kwanjeera Fan, Sili Grapov, Dmitry Barupal, Dinesh Kumar Fiehn, Oliver |
author_sort | Wanichthanarak, Kwanjeera |
collection | PubMed |
description | Similar to genomic and proteomic platforms, metabolomic data acquisition and analysis is becoming a routine approach for investigating biological systems. However, computational approaches for metabolomic data analysis and integration are still maturing. Metabox is a bioinformatics toolbox for deep phenotyping analytics that combines data processing, statistical analysis, functional analysis and integrative exploration of metabolomic data within proteomic and transcriptomic contexts. With the number of options provided in each analysis module, it also supports data analysis of other ‘omic’ families. The toolbox is an R-based web application, and it is freely available at http://kwanjeeraw.github.io/metabox/ under the GPL-3 license. |
format | Online Article Text |
id | pubmed-5283729 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2017 |
publisher | Public Library of Science |
record_format | MEDLINE/PubMed |
spelling | pubmed-52837292017-02-17 Metabox: A Toolbox for Metabolomic Data Analysis, Interpretation and Integrative Exploration Wanichthanarak, Kwanjeera Fan, Sili Grapov, Dmitry Barupal, Dinesh Kumar Fiehn, Oliver PLoS One Research Article Similar to genomic and proteomic platforms, metabolomic data acquisition and analysis is becoming a routine approach for investigating biological systems. However, computational approaches for metabolomic data analysis and integration are still maturing. Metabox is a bioinformatics toolbox for deep phenotyping analytics that combines data processing, statistical analysis, functional analysis and integrative exploration of metabolomic data within proteomic and transcriptomic contexts. With the number of options provided in each analysis module, it also supports data analysis of other ‘omic’ families. The toolbox is an R-based web application, and it is freely available at http://kwanjeeraw.github.io/metabox/ under the GPL-3 license. Public Library of Science 2017-01-31 /pmc/articles/PMC5283729/ /pubmed/28141874 http://dx.doi.org/10.1371/journal.pone.0171046 Text en © 2017 Wanichthanarak et al http://creativecommons.org/licenses/by/4.0/ This is an open access article distributed under the terms of the Creative Commons Attribution License (http://creativecommons.org/licenses/by/4.0/) , which permits unrestricted use, distribution, and reproduction in any medium, provided the original author and source are credited. |
spellingShingle | Research Article Wanichthanarak, Kwanjeera Fan, Sili Grapov, Dmitry Barupal, Dinesh Kumar Fiehn, Oliver Metabox: A Toolbox for Metabolomic Data Analysis, Interpretation and Integrative Exploration |
title | Metabox: A Toolbox for Metabolomic Data Analysis, Interpretation and Integrative Exploration |
title_full | Metabox: A Toolbox for Metabolomic Data Analysis, Interpretation and Integrative Exploration |
title_fullStr | Metabox: A Toolbox for Metabolomic Data Analysis, Interpretation and Integrative Exploration |
title_full_unstemmed | Metabox: A Toolbox for Metabolomic Data Analysis, Interpretation and Integrative Exploration |
title_short | Metabox: A Toolbox for Metabolomic Data Analysis, Interpretation and Integrative Exploration |
title_sort | metabox: a toolbox for metabolomic data analysis, interpretation and integrative exploration |
topic | Research Article |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC5283729/ https://www.ncbi.nlm.nih.gov/pubmed/28141874 http://dx.doi.org/10.1371/journal.pone.0171046 |
work_keys_str_mv | AT wanichthanarakkwanjeera metaboxatoolboxformetabolomicdataanalysisinterpretationandintegrativeexploration AT fansili metaboxatoolboxformetabolomicdataanalysisinterpretationandintegrativeexploration AT grapovdmitry metaboxatoolboxformetabolomicdataanalysisinterpretationandintegrativeexploration AT barupaldineshkumar metaboxatoolboxformetabolomicdataanalysisinterpretationandintegrativeexploration AT fiehnoliver metaboxatoolboxformetabolomicdataanalysisinterpretationandintegrativeexploration |