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Multidimensional metrics of niche space for use with diverse analytical techniques
Multidimensional data are integral to many community-ecological studies and come in various forms, such as stable isotopes, compound specific analyses (e.g., amino acids and fatty acids), and both biodiversity and life history traits. Scientists employing such data often lack standardized metrics to...
Autores principales: | , , |
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Formato: | Online Artículo Texto |
Lenguaje: | English |
Publicado: |
Nature Publishing Group
2017
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Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC5286414/ https://www.ncbi.nlm.nih.gov/pubmed/28145524 http://dx.doi.org/10.1038/srep41599 |
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author | Bowes, Rachel E. Thorp, James H. Reuman, Daniel C. |
author_facet | Bowes, Rachel E. Thorp, James H. Reuman, Daniel C. |
author_sort | Bowes, Rachel E. |
collection | PubMed |
description | Multidimensional data are integral to many community-ecological studies and come in various forms, such as stable isotopes, compound specific analyses (e.g., amino acids and fatty acids), and both biodiversity and life history traits. Scientists employing such data often lack standardized metrics to evaluate communities in niche space where more than 2 dimensions are involved. To alleviate this problem, we developed a graphing and analytical approach for use with more than two variables, based on previously established stable isotope bi-plot metrics. We introduce here our community metrics as R scripts. By extending the original metrics to multiple dimensions, we created n-dimensional plots and metrics to characterize any set of quantitative measurements of a community. We demonstrate the utility of these metrics using stable isotope data; however, the approaches are applicable to many types of data. The resulting metrics provide more and better information compared to traditional analytic frameworks. The approach can be applied in many branches of community ecology, and it offers accessible metrics to quantitatively analyze the structure of communities across ecosystems and through time. |
format | Online Article Text |
id | pubmed-5286414 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2017 |
publisher | Nature Publishing Group |
record_format | MEDLINE/PubMed |
spelling | pubmed-52864142017-02-06 Multidimensional metrics of niche space for use with diverse analytical techniques Bowes, Rachel E. Thorp, James H. Reuman, Daniel C. Sci Rep Article Multidimensional data are integral to many community-ecological studies and come in various forms, such as stable isotopes, compound specific analyses (e.g., amino acids and fatty acids), and both biodiversity and life history traits. Scientists employing such data often lack standardized metrics to evaluate communities in niche space where more than 2 dimensions are involved. To alleviate this problem, we developed a graphing and analytical approach for use with more than two variables, based on previously established stable isotope bi-plot metrics. We introduce here our community metrics as R scripts. By extending the original metrics to multiple dimensions, we created n-dimensional plots and metrics to characterize any set of quantitative measurements of a community. We demonstrate the utility of these metrics using stable isotope data; however, the approaches are applicable to many types of data. The resulting metrics provide more and better information compared to traditional analytic frameworks. The approach can be applied in many branches of community ecology, and it offers accessible metrics to quantitatively analyze the structure of communities across ecosystems and through time. Nature Publishing Group 2017-02-01 /pmc/articles/PMC5286414/ /pubmed/28145524 http://dx.doi.org/10.1038/srep41599 Text en Copyright © 2017, The Author(s) http://creativecommons.org/licenses/by/4.0/ This work is licensed under a Creative Commons Attribution 4.0 International License. The images or other third party material in this article are included in the article’s Creative Commons license, unless indicated otherwise in the credit line; if the material is not included under the Creative Commons license, users will need to obtain permission from the license holder to reproduce the material. To view a copy of this license, visit http://creativecommons.org/licenses/by/4.0/ |
spellingShingle | Article Bowes, Rachel E. Thorp, James H. Reuman, Daniel C. Multidimensional metrics of niche space for use with diverse analytical techniques |
title | Multidimensional metrics of niche space for use with diverse analytical techniques |
title_full | Multidimensional metrics of niche space for use with diverse analytical techniques |
title_fullStr | Multidimensional metrics of niche space for use with diverse analytical techniques |
title_full_unstemmed | Multidimensional metrics of niche space for use with diverse analytical techniques |
title_short | Multidimensional metrics of niche space for use with diverse analytical techniques |
title_sort | multidimensional metrics of niche space for use with diverse analytical techniques |
topic | Article |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC5286414/ https://www.ncbi.nlm.nih.gov/pubmed/28145524 http://dx.doi.org/10.1038/srep41599 |
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