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Selection Limits to Adaptive Walks on Correlated Landscapes
Adaptation depends critically on the effects of new mutations and their dependency on the genetic background in which they occur. These two factors can be summarized by the fitness landscape. However, it would require testing all mutations in all backgrounds, making the definition and analysis of fi...
Autores principales: | , , , |
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Formato: | Online Artículo Texto |
Lenguaje: | English |
Publicado: |
Genetics Society of America
2017
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Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC5289853/ https://www.ncbi.nlm.nih.gov/pubmed/27881471 http://dx.doi.org/10.1534/genetics.116.189340 |
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author | Heredia, Jorge Pérez Trubenová, Barbora Sudholt, Dirk Paixão, Tiago |
author_facet | Heredia, Jorge Pérez Trubenová, Barbora Sudholt, Dirk Paixão, Tiago |
author_sort | Heredia, Jorge Pérez |
collection | PubMed |
description | Adaptation depends critically on the effects of new mutations and their dependency on the genetic background in which they occur. These two factors can be summarized by the fitness landscape. However, it would require testing all mutations in all backgrounds, making the definition and analysis of fitness landscapes mostly inaccessible. Instead of postulating a particular fitness landscape, we address this problem by considering general classes of landscapes and calculating an upper limit for the time it takes for a population to reach a fitness peak, circumventing the need to have full knowledge about the fitness landscape. We analyze populations in the weak-mutation regime and characterize the conditions that enable them to quickly reach the fitness peak as a function of the number of sites under selection. We show that for additive landscapes there is a critical selection strength enabling populations to reach high-fitness genotypes, regardless of the distribution of effects. This threshold scales with the number of sites under selection, effectively setting a limit to adaptation, and results from the inevitable increase in deleterious mutational pressure as the population adapts in a space of discrete genotypes. Furthermore, we show that for the class of all unimodal landscapes this condition is sufficient but not necessary for rapid adaptation, as in some highly epistatic landscapes the critical strength does not depend on the number of sites under selection; effectively removing this barrier to adaptation. |
format | Online Article Text |
id | pubmed-5289853 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2017 |
publisher | Genetics Society of America |
record_format | MEDLINE/PubMed |
spelling | pubmed-52898532017-02-10 Selection Limits to Adaptive Walks on Correlated Landscapes Heredia, Jorge Pérez Trubenová, Barbora Sudholt, Dirk Paixão, Tiago Genetics Investigations Adaptation depends critically on the effects of new mutations and their dependency on the genetic background in which they occur. These two factors can be summarized by the fitness landscape. However, it would require testing all mutations in all backgrounds, making the definition and analysis of fitness landscapes mostly inaccessible. Instead of postulating a particular fitness landscape, we address this problem by considering general classes of landscapes and calculating an upper limit for the time it takes for a population to reach a fitness peak, circumventing the need to have full knowledge about the fitness landscape. We analyze populations in the weak-mutation regime and characterize the conditions that enable them to quickly reach the fitness peak as a function of the number of sites under selection. We show that for additive landscapes there is a critical selection strength enabling populations to reach high-fitness genotypes, regardless of the distribution of effects. This threshold scales with the number of sites under selection, effectively setting a limit to adaptation, and results from the inevitable increase in deleterious mutational pressure as the population adapts in a space of discrete genotypes. Furthermore, we show that for the class of all unimodal landscapes this condition is sufficient but not necessary for rapid adaptation, as in some highly epistatic landscapes the critical strength does not depend on the number of sites under selection; effectively removing this barrier to adaptation. Genetics Society of America 2017-02 2016-11-22 /pmc/articles/PMC5289853/ /pubmed/27881471 http://dx.doi.org/10.1534/genetics.116.189340 Text en Copyright © 2017 by the Genetics Society of America Available freely online through the author-supported open access option. |
spellingShingle | Investigations Heredia, Jorge Pérez Trubenová, Barbora Sudholt, Dirk Paixão, Tiago Selection Limits to Adaptive Walks on Correlated Landscapes |
title | Selection Limits to Adaptive Walks on Correlated Landscapes |
title_full | Selection Limits to Adaptive Walks on Correlated Landscapes |
title_fullStr | Selection Limits to Adaptive Walks on Correlated Landscapes |
title_full_unstemmed | Selection Limits to Adaptive Walks on Correlated Landscapes |
title_short | Selection Limits to Adaptive Walks on Correlated Landscapes |
title_sort | selection limits to adaptive walks on correlated landscapes |
topic | Investigations |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC5289853/ https://www.ncbi.nlm.nih.gov/pubmed/27881471 http://dx.doi.org/10.1534/genetics.116.189340 |
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