Cargando…

Selection Limits to Adaptive Walks on Correlated Landscapes

Adaptation depends critically on the effects of new mutations and their dependency on the genetic background in which they occur. These two factors can be summarized by the fitness landscape. However, it would require testing all mutations in all backgrounds, making the definition and analysis of fi...

Descripción completa

Detalles Bibliográficos
Autores principales: Heredia, Jorge Pérez, Trubenová, Barbora, Sudholt, Dirk, Paixão, Tiago
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Genetics Society of America 2017
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC5289853/
https://www.ncbi.nlm.nih.gov/pubmed/27881471
http://dx.doi.org/10.1534/genetics.116.189340
_version_ 1782504552372633600
author Heredia, Jorge Pérez
Trubenová, Barbora
Sudholt, Dirk
Paixão, Tiago
author_facet Heredia, Jorge Pérez
Trubenová, Barbora
Sudholt, Dirk
Paixão, Tiago
author_sort Heredia, Jorge Pérez
collection PubMed
description Adaptation depends critically on the effects of new mutations and their dependency on the genetic background in which they occur. These two factors can be summarized by the fitness landscape. However, it would require testing all mutations in all backgrounds, making the definition and analysis of fitness landscapes mostly inaccessible. Instead of postulating a particular fitness landscape, we address this problem by considering general classes of landscapes and calculating an upper limit for the time it takes for a population to reach a fitness peak, circumventing the need to have full knowledge about the fitness landscape. We analyze populations in the weak-mutation regime and characterize the conditions that enable them to quickly reach the fitness peak as a function of the number of sites under selection. We show that for additive landscapes there is a critical selection strength enabling populations to reach high-fitness genotypes, regardless of the distribution of effects. This threshold scales with the number of sites under selection, effectively setting a limit to adaptation, and results from the inevitable increase in deleterious mutational pressure as the population adapts in a space of discrete genotypes. Furthermore, we show that for the class of all unimodal landscapes this condition is sufficient but not necessary for rapid adaptation, as in some highly epistatic landscapes the critical strength does not depend on the number of sites under selection; effectively removing this barrier to adaptation.
format Online
Article
Text
id pubmed-5289853
institution National Center for Biotechnology Information
language English
publishDate 2017
publisher Genetics Society of America
record_format MEDLINE/PubMed
spelling pubmed-52898532017-02-10 Selection Limits to Adaptive Walks on Correlated Landscapes Heredia, Jorge Pérez Trubenová, Barbora Sudholt, Dirk Paixão, Tiago Genetics Investigations Adaptation depends critically on the effects of new mutations and their dependency on the genetic background in which they occur. These two factors can be summarized by the fitness landscape. However, it would require testing all mutations in all backgrounds, making the definition and analysis of fitness landscapes mostly inaccessible. Instead of postulating a particular fitness landscape, we address this problem by considering general classes of landscapes and calculating an upper limit for the time it takes for a population to reach a fitness peak, circumventing the need to have full knowledge about the fitness landscape. We analyze populations in the weak-mutation regime and characterize the conditions that enable them to quickly reach the fitness peak as a function of the number of sites under selection. We show that for additive landscapes there is a critical selection strength enabling populations to reach high-fitness genotypes, regardless of the distribution of effects. This threshold scales with the number of sites under selection, effectively setting a limit to adaptation, and results from the inevitable increase in deleterious mutational pressure as the population adapts in a space of discrete genotypes. Furthermore, we show that for the class of all unimodal landscapes this condition is sufficient but not necessary for rapid adaptation, as in some highly epistatic landscapes the critical strength does not depend on the number of sites under selection; effectively removing this barrier to adaptation. Genetics Society of America 2017-02 2016-11-22 /pmc/articles/PMC5289853/ /pubmed/27881471 http://dx.doi.org/10.1534/genetics.116.189340 Text en Copyright © 2017 by the Genetics Society of America Available freely online through the author-supported open access option.
spellingShingle Investigations
Heredia, Jorge Pérez
Trubenová, Barbora
Sudholt, Dirk
Paixão, Tiago
Selection Limits to Adaptive Walks on Correlated Landscapes
title Selection Limits to Adaptive Walks on Correlated Landscapes
title_full Selection Limits to Adaptive Walks on Correlated Landscapes
title_fullStr Selection Limits to Adaptive Walks on Correlated Landscapes
title_full_unstemmed Selection Limits to Adaptive Walks on Correlated Landscapes
title_short Selection Limits to Adaptive Walks on Correlated Landscapes
title_sort selection limits to adaptive walks on correlated landscapes
topic Investigations
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC5289853/
https://www.ncbi.nlm.nih.gov/pubmed/27881471
http://dx.doi.org/10.1534/genetics.116.189340
work_keys_str_mv AT herediajorgeperez selectionlimitstoadaptivewalksoncorrelatedlandscapes
AT trubenovabarbora selectionlimitstoadaptivewalksoncorrelatedlandscapes
AT sudholtdirk selectionlimitstoadaptivewalksoncorrelatedlandscapes
AT paixaotiago selectionlimitstoadaptivewalksoncorrelatedlandscapes