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The power metric: a new statistically robust enrichment-type metric for virtual screening applications with early recovery capability
A new metric for the evaluation of model performance in the field of virtual screening and quantitative structure–activity relationship applications is described. This metric has been termed the power metric and is defined as the fraction of the true positive rate divided by the sum of the true posi...
Autores principales: | , , , , |
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Formato: | Online Artículo Texto |
Lenguaje: | English |
Publicado: |
Springer International Publishing
2017
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Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC5289935/ https://www.ncbi.nlm.nih.gov/pubmed/28203291 http://dx.doi.org/10.1186/s13321-016-0189-4 |
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author | Lopes, Julio Cesar Dias dos Santos, Fábio Mendes Martins-José, Andrelly Augustyns, Koen De Winter, Hans |
author_facet | Lopes, Julio Cesar Dias dos Santos, Fábio Mendes Martins-José, Andrelly Augustyns, Koen De Winter, Hans |
author_sort | Lopes, Julio Cesar Dias |
collection | PubMed |
description | A new metric for the evaluation of model performance in the field of virtual screening and quantitative structure–activity relationship applications is described. This metric has been termed the power metric and is defined as the fraction of the true positive rate divided by the sum of the true positive and false positive rates, for a given cutoff threshold. The performance of this metric is compared with alternative metrics such as the enrichment factor, the relative enrichment factor, the receiver operating curve enrichment factor, the correct classification rate, Matthews correlation coefficient and Cohen’s kappa coefficient. The performance of this new metric is found to be quite robust with respect to variations in the applied cutoff threshold and ratio of the number of active compounds to the total number of compounds, and at the same time being sensitive to variations in model quality. It possesses the correct characteristics for its application in early-recognition virtual screening problems. |
format | Online Article Text |
id | pubmed-5289935 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2017 |
publisher | Springer International Publishing |
record_format | MEDLINE/PubMed |
spelling | pubmed-52899352017-02-15 The power metric: a new statistically robust enrichment-type metric for virtual screening applications with early recovery capability Lopes, Julio Cesar Dias dos Santos, Fábio Mendes Martins-José, Andrelly Augustyns, Koen De Winter, Hans J Cheminform Research Article A new metric for the evaluation of model performance in the field of virtual screening and quantitative structure–activity relationship applications is described. This metric has been termed the power metric and is defined as the fraction of the true positive rate divided by the sum of the true positive and false positive rates, for a given cutoff threshold. The performance of this metric is compared with alternative metrics such as the enrichment factor, the relative enrichment factor, the receiver operating curve enrichment factor, the correct classification rate, Matthews correlation coefficient and Cohen’s kappa coefficient. The performance of this new metric is found to be quite robust with respect to variations in the applied cutoff threshold and ratio of the number of active compounds to the total number of compounds, and at the same time being sensitive to variations in model quality. It possesses the correct characteristics for its application in early-recognition virtual screening problems. Springer International Publishing 2017-02-02 /pmc/articles/PMC5289935/ /pubmed/28203291 http://dx.doi.org/10.1186/s13321-016-0189-4 Text en © The Author(s) 2017 Open AccessThis article is distributed under the terms of the Creative Commons Attribution 4.0 International License (http://creativecommons.org/licenses/by/4.0/), which permits unrestricted use, distribution, and reproduction in any medium, provided you give appropriate credit to the original author(s) and the source, provide a link to the Creative Commons license, and indicate if changes were made. The Creative Commons Public Domain Dedication waiver (http://creativecommons.org/publicdomain/zero/1.0/) applies to the data made available in this article, unless otherwise stated. |
spellingShingle | Research Article Lopes, Julio Cesar Dias dos Santos, Fábio Mendes Martins-José, Andrelly Augustyns, Koen De Winter, Hans The power metric: a new statistically robust enrichment-type metric for virtual screening applications with early recovery capability |
title | The power metric: a new statistically robust enrichment-type metric for virtual screening applications with early recovery capability |
title_full | The power metric: a new statistically robust enrichment-type metric for virtual screening applications with early recovery capability |
title_fullStr | The power metric: a new statistically robust enrichment-type metric for virtual screening applications with early recovery capability |
title_full_unstemmed | The power metric: a new statistically robust enrichment-type metric for virtual screening applications with early recovery capability |
title_short | The power metric: a new statistically robust enrichment-type metric for virtual screening applications with early recovery capability |
title_sort | power metric: a new statistically robust enrichment-type metric for virtual screening applications with early recovery capability |
topic | Research Article |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC5289935/ https://www.ncbi.nlm.nih.gov/pubmed/28203291 http://dx.doi.org/10.1186/s13321-016-0189-4 |
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