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Crystal structure of (3E)-5-nitro-3-(2-phenylhydrazinylidene)-1H-indol-2(3H)-one
The reaction between 5-nitroisatin and phenylhydrazine in acidic ethanol yields the title compound, C(14)H(10)N(4)O(3), whose molecular structure deviates slightly from a planar geometry (r.m.s. deviation = 0.065 Å for the mean plane through all non-H atoms). An intramolecular N—H⋯O hydrogen bon...
Autores principales: | , , , , |
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Formato: | Online Artículo Texto |
Lenguaje: | English |
Publicado: |
International Union of Crystallography
2017
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Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC5290558/ https://www.ncbi.nlm.nih.gov/pubmed/28217335 http://dx.doi.org/10.1107/S2056989016020375 |
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author | Velasques, Jecika Maciel Gervini, Vanessa Carratu Bortoluzzi, Adaílton João de Farias, Renan Lira de Oliveira, Adriano Bof |
author_facet | Velasques, Jecika Maciel Gervini, Vanessa Carratu Bortoluzzi, Adaílton João de Farias, Renan Lira de Oliveira, Adriano Bof |
author_sort | Velasques, Jecika Maciel |
collection | PubMed |
description | The reaction between 5-nitroisatin and phenylhydrazine in acidic ethanol yields the title compound, C(14)H(10)N(4)O(3), whose molecular structure deviates slightly from a planar geometry (r.m.s. deviation = 0.065 Å for the mean plane through all non-H atoms). An intramolecular N—H⋯O hydrogen bond is present, forming a ring of graph-set motif S(6). In the crystal, molecules are linked by N—H⋯O and C—H⋯O hydrogen-bonding interactions into a two-dimensional network along (120), and rings of graph-set motif R (2) (2)(8), R (2) (2)(26) and R (4) (4)(32) are observed. Additionally, a Hirshfeld surface analysis suggests that the molecules are stacked along [100] through C=O⋯Cg interactions and indicates that the most important contributions for the crystal structure are O⋯H (28.5%) and H⋯H (26.7%) interactions. An in silico evaluation of the title compound with the DHFR enzyme (dihydrofolate reductase) was performed. The isatin–hydrazone derivative and the active site of the selected enzyme show N—H⋯O(ASP29), N—H⋯O(ILE96) and Cg⋯Cg(PHE33) interactions. |
format | Online Article Text |
id | pubmed-5290558 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2017 |
publisher | International Union of Crystallography |
record_format | MEDLINE/PubMed |
spelling | pubmed-52905582017-02-17 Crystal structure of (3E)-5-nitro-3-(2-phenylhydrazinylidene)-1H-indol-2(3H)-one Velasques, Jecika Maciel Gervini, Vanessa Carratu Bortoluzzi, Adaílton João de Farias, Renan Lira de Oliveira, Adriano Bof Acta Crystallogr E Crystallogr Commun Research Communications The reaction between 5-nitroisatin and phenylhydrazine in acidic ethanol yields the title compound, C(14)H(10)N(4)O(3), whose molecular structure deviates slightly from a planar geometry (r.m.s. deviation = 0.065 Å for the mean plane through all non-H atoms). An intramolecular N—H⋯O hydrogen bond is present, forming a ring of graph-set motif S(6). In the crystal, molecules are linked by N—H⋯O and C—H⋯O hydrogen-bonding interactions into a two-dimensional network along (120), and rings of graph-set motif R (2) (2)(8), R (2) (2)(26) and R (4) (4)(32) are observed. Additionally, a Hirshfeld surface analysis suggests that the molecules are stacked along [100] through C=O⋯Cg interactions and indicates that the most important contributions for the crystal structure are O⋯H (28.5%) and H⋯H (26.7%) interactions. An in silico evaluation of the title compound with the DHFR enzyme (dihydrofolate reductase) was performed. The isatin–hydrazone derivative and the active site of the selected enzyme show N—H⋯O(ASP29), N—H⋯O(ILE96) and Cg⋯Cg(PHE33) interactions. International Union of Crystallography 2017-01-13 /pmc/articles/PMC5290558/ /pubmed/28217335 http://dx.doi.org/10.1107/S2056989016020375 Text en © Velasques et al. 2017 http://creativecommons.org/licenses/by/2.0/uk/ This is an open-access article distributed under the terms of the Creative Commons Attribution (CC-BY) Licence, which permits unrestricted use, distribution, and reproduction in any medium, provided the original authors and source are cited.http://creativecommons.org/licenses/by/2.0/uk/ |
spellingShingle | Research Communications Velasques, Jecika Maciel Gervini, Vanessa Carratu Bortoluzzi, Adaílton João de Farias, Renan Lira de Oliveira, Adriano Bof Crystal structure of (3E)-5-nitro-3-(2-phenylhydrazinylidene)-1H-indol-2(3H)-one |
title | Crystal structure of (3E)-5-nitro-3-(2-phenylhydrazinylidene)-1H-indol-2(3H)-one |
title_full | Crystal structure of (3E)-5-nitro-3-(2-phenylhydrazinylidene)-1H-indol-2(3H)-one |
title_fullStr | Crystal structure of (3E)-5-nitro-3-(2-phenylhydrazinylidene)-1H-indol-2(3H)-one |
title_full_unstemmed | Crystal structure of (3E)-5-nitro-3-(2-phenylhydrazinylidene)-1H-indol-2(3H)-one |
title_short | Crystal structure of (3E)-5-nitro-3-(2-phenylhydrazinylidene)-1H-indol-2(3H)-one |
title_sort | crystal structure of (3e)-5-nitro-3-(2-phenylhydrazinylidene)-1h-indol-2(3h)-one |
topic | Research Communications |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC5290558/ https://www.ncbi.nlm.nih.gov/pubmed/28217335 http://dx.doi.org/10.1107/S2056989016020375 |
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