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A living vector field reveals constraints on galactose network induction in yeast
When a cell encounters a new environment, its transcriptional response can be constrained by its history. For example, yeast cells in galactose induce GAL genes with a speed and unanimity that depends on previous nutrient conditions. Cellular memory of long‐term glucose exposure delays GAL induction...
Autores principales: | , |
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Formato: | Online Artículo Texto |
Lenguaje: | English |
Publicado: |
John Wiley and Sons Inc.
2017
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Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC5293160/ https://www.ncbi.nlm.nih.gov/pubmed/28137775 http://dx.doi.org/10.15252/msb.20167323 |
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author | Stockwell, Sarah R Rifkin, Scott A |
author_facet | Stockwell, Sarah R Rifkin, Scott A |
author_sort | Stockwell, Sarah R |
collection | PubMed |
description | When a cell encounters a new environment, its transcriptional response can be constrained by its history. For example, yeast cells in galactose induce GAL genes with a speed and unanimity that depends on previous nutrient conditions. Cellular memory of long‐term glucose exposure delays GAL induction and makes it highly variable with in a cell population, while other nutrient histories lead to rapid, uniform responses. To investigate how cell‐level gene expression dynamics produce population‐level phenotypes, we built living vector fields from thousands of single‐cell time courses of the proteins Gal3p and Gal1p as cells switched to galactose from various nutrient histories. We show that, after sustained glucose exposure, the lack of these GAL transducers leads to induction delays that are long but also variable; that cellular resources constrain induction; and that bimodally distributed expression levels arise from lineage selection—a subpopulation of cells induces more quickly and outcompetes the rest. Our results illuminate cellular memory in this important model system and illustrate how resources and randomness interact to shape the response of a population to a new environment. |
format | Online Article Text |
id | pubmed-5293160 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2017 |
publisher | John Wiley and Sons Inc. |
record_format | MEDLINE/PubMed |
spelling | pubmed-52931602017-02-07 A living vector field reveals constraints on galactose network induction in yeast Stockwell, Sarah R Rifkin, Scott A Mol Syst Biol Articles When a cell encounters a new environment, its transcriptional response can be constrained by its history. For example, yeast cells in galactose induce GAL genes with a speed and unanimity that depends on previous nutrient conditions. Cellular memory of long‐term glucose exposure delays GAL induction and makes it highly variable with in a cell population, while other nutrient histories lead to rapid, uniform responses. To investigate how cell‐level gene expression dynamics produce population‐level phenotypes, we built living vector fields from thousands of single‐cell time courses of the proteins Gal3p and Gal1p as cells switched to galactose from various nutrient histories. We show that, after sustained glucose exposure, the lack of these GAL transducers leads to induction delays that are long but also variable; that cellular resources constrain induction; and that bimodally distributed expression levels arise from lineage selection—a subpopulation of cells induces more quickly and outcompetes the rest. Our results illuminate cellular memory in this important model system and illustrate how resources and randomness interact to shape the response of a population to a new environment. John Wiley and Sons Inc. 2017-01-01 /pmc/articles/PMC5293160/ /pubmed/28137775 http://dx.doi.org/10.15252/msb.20167323 Text en © 2017 The Authors. Published under the terms of the CC BY 4.0 license This is an open access article under the terms of the Creative Commons Attribution 4.0 (http://creativecommons.org/licenses/by/4.0/) License, which permits use, distribution and reproduction in any medium, provided the original work is properly cited. |
spellingShingle | Articles Stockwell, Sarah R Rifkin, Scott A A living vector field reveals constraints on galactose network induction in yeast |
title | A living vector field reveals constraints on galactose network induction in yeast |
title_full | A living vector field reveals constraints on galactose network induction in yeast |
title_fullStr | A living vector field reveals constraints on galactose network induction in yeast |
title_full_unstemmed | A living vector field reveals constraints on galactose network induction in yeast |
title_short | A living vector field reveals constraints on galactose network induction in yeast |
title_sort | living vector field reveals constraints on galactose network induction in yeast |
topic | Articles |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC5293160/ https://www.ncbi.nlm.nih.gov/pubmed/28137775 http://dx.doi.org/10.15252/msb.20167323 |
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