Cargando…

Comparative Study of Elastic Network Model and Protein Contact Network for Protein Complexes: The Hemoglobin Case

The overall topology and interfacial interactions play key roles in understanding structural and functional principles of protein complexes. Elastic Network Model (ENM) and Protein Contact Network (PCN) are two widely used methods for high throughput investigation of structures and interactions with...

Descripción completa

Detalles Bibliográficos
Autores principales:	Hu, Guang, Di Paola, Luisa, Liang, Zhongjie, Giuliani, Alessandro
Formato:	Online Artículo Texto
Lenguaje:	English
Publicado:	Hindawi Publishing Corporation 2017
Materias:	Review Article
Acceso en línea:	https://www.ncbi.nlm.nih.gov/pmc/articles/PMC5294226/ https://www.ncbi.nlm.nih.gov/pubmed/28243596 http://dx.doi.org/10.1155/2017/2483264

Ejemplares similares

Network Proteomics: From Protein Structure to Protein-Protein Interaction
por: Hu, Guang, et al.
Publicado: (2017)

Characterization of Protein–Protein Interfaces through a Protein Contact Network Approach
por: Di Paola, Luisa, et al.
Publicado: (2015)

PyPCN: protein contact networks in PyMOL
por: Rosignoli, Serena, et al.
Publicado: (2023)

Comparing interfacial dynamics in protein-protein complexes: an elastic network approach
por: Zen, Andrea, et al.
Publicado: (2010)

Computational analysis of the sequence-structure relation in SARS-CoV-2 spike protein using protein contact networks
por: Guzzi, Pietro Hiram, et al.
Publicado: (2023)

Elastic network model of learned maintained contacts to predict protein motion
por: Putz, Ines, et al.
Publicado: (2017)

Designed Elastic Networks: Models of Complex Protein Machinery
por: Flechsig, Holger, et al.
Publicado: (2018)

Modelling and Recognition of Protein Contact Networks by Multiple Kernel Learning and Dissimilarity Representations
por: Martino, Alessio, et al.
Publicado: (2020)

Robustness Elasticity in Complex Networks
por: Matisziw, Timothy C., et al.
Publicado: (2012)

Indeterminacy of Reverse Engineering of Gene Regulatory Networks: The Curse of Gene Elasticity
por: Krishnan, Arun, et al.
Publicado: (2007)

A Coarse-Grained Elastic Network Atom Contact Model and Its Use in the Simulation of Protein Dynamics and the Prediction of the Effect of Mutations
por: Frappier, Vincent, et al.
Publicado: (2014)

Elastic network model of allosteric regulation in protein kinase PDK1
por: Williams, Gareth
Publicado: (2010)

Coarse-Grained Protein Dynamics Studies Using Elastic Network Models
por: Togashi, Yuichi, et al.
Publicado: (2018)

GIANT: A Cytoscape Plugin for Modular Networks
por: Cumbo, Fabio, et al.
Publicado: (2014)

Intrinsic Dynamics Analysis of a DNA Octahedron by Elastic Network Model
por: Hu, Guang, et al.
Publicado: (2017)

Protein microparticles visualize the contact network and rigidity onset in the gelation of model proteins
por: Rouwhorst, Joep, et al.
Publicado: (2021)

Energy transport pathway in proteins: Insights from non-equilibrium molecular dynamics with elastic network model
por: Wang, Wei Bu, et al.
Publicado: (2018)

SAHBNET, an Accessible Surface-Based Elastic Network: An Application to Membrane Protein
por: Dony, Nicolas, et al.
Publicado: (2013)

Variability of contact process in complex networks
por: Gong, Kai, et al.
Publicado: (2011)

Global Motions of the Nuclear Pore Complex: Insights from Elastic Network Models
por: Lezon, Timothy R., et al.
Publicado: (2009)

Modeling of Protein Structural Flexibility and Large-Scale Dynamics: Coarse-Grained Simulations and Elastic Network Models
por: Kmiecik, Sebastian, et al.
Publicado: (2018)

Design of Elastic Networks with Evolutionary Optimized Long-Range Communication as Mechanical Models of Allosteric Proteins
por: Flechsig, Holger
Publicado: (2017)

Mechanics of elastic contacts
por: Hills, D A, et al.
Publicado: (1993)

Degenerate Elastic Networks
por: Del Nin, Giacomo, et al.
Publicado: (2020)

Complex Intramolecular Mechanics of G-actin — An Elastic Network Study
por: Düttmann, Markus, et al.
Publicado: (2012)

On the Planarity of Validated Complexes of Model Organisms in Protein-Protein Interaction Networks
por: Cooper, Kathryn, et al.
Publicado: (2020)

Network biology discovers pathogen contact points in host protein-protein interactomes
por: Ahmed, Hadia, et al.
Publicado: (2018)

Protein dynamic communities from elastic network models align closely to the communities defined by molecular dynamics
por: Mishra, Sambit Kumar, et al.
Publicado: (2018)

Elastic network models for RNA: a comparative assessment with molecular dynamics and SHAPE experiments
por: Pinamonti, Giovanni, et al.
Publicado: (2015)

Comparative Plasma Protein Profiling of Hemoglobin H Disease
por: Leecharoenkiat, Kamonlak, et al.
Publicado: (2014)

A Relay Network of Extracellular Heme-Binding Proteins Drives C. albicans Iron Acquisition from Hemoglobin
por: Kuznets, Galit, et al.
Publicado: (2014)

Detecting Protein Complexes in Protein Interaction Networks Modeled as Gene Expression Biclusters
por: Hanna, Eileen Marie, et al.
Publicado: (2015)

Tangential elastic contact model of the cylindrical contact with different axis crossing angles
por: Guo, Tieneng, et al.
Publicado: (2022)

Analyzing Fluctuation Properties in Protein Elastic Networks with Sequence-Specific and Distance-Dependent Interactions
por: Amyot, Romain, et al.
Publicado: (2019)

Reconstruction of the Protein-Protein Interaction Network for Protein Complexes Identification by Walking on the Protein Pair Fingerprints Similarity Network
por: Xu, Bo, et al.
Publicado: (2018)

Small protein complex prediction algorithm based on protein–protein interaction network segmentation
por: Lyu, Jiaqing, et al.
Publicado: (2022)

Analysis of Conformational Motions and Residue Fluctuations for Escherichia coli Ribose-Binding Protein Revealed with Elastic Network Models
por: Li, Hai Yan, et al.
Publicado: (2013)

Computational Simulation of the Activation Cycle of Gα Subunit in the G Protein Cycle Using an Elastic Network Model
por: Kim, Min Hyeok, et al.
Publicado: (2016)

Two cosine wave elastic-plastic contact model
por: Guo, Tieneng, et al.
Publicado: (2020)

Vinculin Motion Modes Analysis with Elastic Network Model
por: Jiao, Xiong, et al.
Publicado: (2011)

Cannot write session to /tmp/vufind_sessions/sess_v0rogjo14e3f9s1uh0en8966t5