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Facing the phase problem in Coherent Diffractive Imaging via Memetic Algorithms

Coherent Diffractive Imaging is a lensless technique that allows imaging of matter at a spatial resolution not limited by lens aberrations. This technique exploits the measured diffraction pattern of a coherent beam scattered by periodic and non–periodic objects to retrieve spatial information. The...

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Autores principales: Colombo, Alessandro, Galli, Davide Emilio, De Caro, Liberato, Scattarella, Francesco, Carlino, Elvio
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Nature Publishing Group 2017
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC5299835/
https://www.ncbi.nlm.nih.gov/pubmed/28181592
http://dx.doi.org/10.1038/srep42236
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author Colombo, Alessandro
Galli, Davide Emilio
De Caro, Liberato
Scattarella, Francesco
Carlino, Elvio
author_facet Colombo, Alessandro
Galli, Davide Emilio
De Caro, Liberato
Scattarella, Francesco
Carlino, Elvio
author_sort Colombo, Alessandro
collection PubMed
description Coherent Diffractive Imaging is a lensless technique that allows imaging of matter at a spatial resolution not limited by lens aberrations. This technique exploits the measured diffraction pattern of a coherent beam scattered by periodic and non–periodic objects to retrieve spatial information. The diffracted intensity, for weak–scattering objects, is proportional to the modulus of the Fourier Transform of the object scattering function. Any phase information, needed to retrieve its scattering function, has to be retrieved by means of suitable algorithms. Here we present a new approach, based on a memetic algorithm, i.e. a hybrid genetic algorithm, to face the phase problem, which exploits the synergy of deterministic and stochastic optimization methods. The new approach has been tested on simulated data and applied to the phasing of transmission electron microscopy coherent electron diffraction data of a SrTiO(3) sample. We have been able to quantitatively retrieve the projected atomic potential, and also image the oxygen columns, which are not directly visible in the relevant high-resolution transmission electron microscopy images. Our approach proves to be a new powerful tool for the study of matter at atomic resolution and opens new perspectives in those applications in which effective phase retrieval is necessary.
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spelling pubmed-52998352017-02-13 Facing the phase problem in Coherent Diffractive Imaging via Memetic Algorithms Colombo, Alessandro Galli, Davide Emilio De Caro, Liberato Scattarella, Francesco Carlino, Elvio Sci Rep Article Coherent Diffractive Imaging is a lensless technique that allows imaging of matter at a spatial resolution not limited by lens aberrations. This technique exploits the measured diffraction pattern of a coherent beam scattered by periodic and non–periodic objects to retrieve spatial information. The diffracted intensity, for weak–scattering objects, is proportional to the modulus of the Fourier Transform of the object scattering function. Any phase information, needed to retrieve its scattering function, has to be retrieved by means of suitable algorithms. Here we present a new approach, based on a memetic algorithm, i.e. a hybrid genetic algorithm, to face the phase problem, which exploits the synergy of deterministic and stochastic optimization methods. The new approach has been tested on simulated data and applied to the phasing of transmission electron microscopy coherent electron diffraction data of a SrTiO(3) sample. We have been able to quantitatively retrieve the projected atomic potential, and also image the oxygen columns, which are not directly visible in the relevant high-resolution transmission electron microscopy images. Our approach proves to be a new powerful tool for the study of matter at atomic resolution and opens new perspectives in those applications in which effective phase retrieval is necessary. Nature Publishing Group 2017-02-09 /pmc/articles/PMC5299835/ /pubmed/28181592 http://dx.doi.org/10.1038/srep42236 Text en Copyright © 2017, The Author(s) http://creativecommons.org/licenses/by/4.0/ This work is licensed under a Creative Commons Attribution 4.0 International License. The images or other third party material in this article are included in the article’s Creative Commons license, unless indicated otherwise in the credit line; if the material is not included under the Creative Commons license, users will need to obtain permission from the license holder to reproduce the material. To view a copy of this license, visit http://creativecommons.org/licenses/by/4.0/
spellingShingle Article
Colombo, Alessandro
Galli, Davide Emilio
De Caro, Liberato
Scattarella, Francesco
Carlino, Elvio
Facing the phase problem in Coherent Diffractive Imaging via Memetic Algorithms
title Facing the phase problem in Coherent Diffractive Imaging via Memetic Algorithms
title_full Facing the phase problem in Coherent Diffractive Imaging via Memetic Algorithms
title_fullStr Facing the phase problem in Coherent Diffractive Imaging via Memetic Algorithms
title_full_unstemmed Facing the phase problem in Coherent Diffractive Imaging via Memetic Algorithms
title_short Facing the phase problem in Coherent Diffractive Imaging via Memetic Algorithms
title_sort facing the phase problem in coherent diffractive imaging via memetic algorithms
topic Article
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC5299835/
https://www.ncbi.nlm.nih.gov/pubmed/28181592
http://dx.doi.org/10.1038/srep42236
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