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Seven protective miRNA signatures for prognosis of cervical cancer

Cervical cancer is the second cause of cancer death in females in their 20s and 30s, but there were limited studies about its prognosis. This study aims to identify miRNA related to prognosis and study their functions. TCGA data of patients with cervical cancer were used to build univariate Cox'...

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Autores principales: Liu, Bei, Ding, Jin-feng, Luo, Jian, Lu, Li, Yang, Fen, Tan, Xiao-dong
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Impact Journals LLC 2016
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC5302945/
https://www.ncbi.nlm.nih.gov/pubmed/27447860
http://dx.doi.org/10.18632/oncotarget.10678
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author Liu, Bei
Ding, Jin-feng
Luo, Jian
Lu, Li
Yang, Fen
Tan, Xiao-dong
author_facet Liu, Bei
Ding, Jin-feng
Luo, Jian
Lu, Li
Yang, Fen
Tan, Xiao-dong
author_sort Liu, Bei
collection PubMed
description Cervical cancer is the second cause of cancer death in females in their 20s and 30s, but there were limited studies about its prognosis. This study aims to identify miRNA related to prognosis and study their functions. TCGA data of patients with cervical cancer were used to build univariate Cox's model with single clinical parameter or miRNA expression level. Multivariate Cox's model was built using both clinical information and miRNA expression levels. At last, STRING was used to enrich gene ontology or pathway for validated targets of significant miRNAs, and visualize the interactions among them. Using univariate Cox's model with clinical parameters, we found that two clinical parameters, tobacco use and clinical stage, and seven miRNAs were highly correlated with the survival status. Only using the expression level of miRNA signatures, the model could separate patients into high-risk and low-risk groups successfully. An optimal feature-selected model was proposed based on two clinical parameters and seven miRNAs. Functional analysis of these seven miRNAs showed they were associated to various pathways related to cancer, including MAPK, VEGF and P53 pathways. These results helped the research of identifying targets for targeted therapy which could potentially allow tailoring of treatment for cervical cancer patients.
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spelling pubmed-53029452017-02-13 Seven protective miRNA signatures for prognosis of cervical cancer Liu, Bei Ding, Jin-feng Luo, Jian Lu, Li Yang, Fen Tan, Xiao-dong Oncotarget Research Paper Cervical cancer is the second cause of cancer death in females in their 20s and 30s, but there were limited studies about its prognosis. This study aims to identify miRNA related to prognosis and study their functions. TCGA data of patients with cervical cancer were used to build univariate Cox's model with single clinical parameter or miRNA expression level. Multivariate Cox's model was built using both clinical information and miRNA expression levels. At last, STRING was used to enrich gene ontology or pathway for validated targets of significant miRNAs, and visualize the interactions among them. Using univariate Cox's model with clinical parameters, we found that two clinical parameters, tobacco use and clinical stage, and seven miRNAs were highly correlated with the survival status. Only using the expression level of miRNA signatures, the model could separate patients into high-risk and low-risk groups successfully. An optimal feature-selected model was proposed based on two clinical parameters and seven miRNAs. Functional analysis of these seven miRNAs showed they were associated to various pathways related to cancer, including MAPK, VEGF and P53 pathways. These results helped the research of identifying targets for targeted therapy which could potentially allow tailoring of treatment for cervical cancer patients. Impact Journals LLC 2016-07-18 /pmc/articles/PMC5302945/ /pubmed/27447860 http://dx.doi.org/10.18632/oncotarget.10678 Text en Copyright: © 2016 Liu et al. http://creativecommons.org/licenses/by/2.5/ This is an open-access article distributed under the terms of the Creative Commons Attribution License, which permits unrestricted use, distribution, and reproduction in any medium, provided the original author and source are credited.
spellingShingle Research Paper
Liu, Bei
Ding, Jin-feng
Luo, Jian
Lu, Li
Yang, Fen
Tan, Xiao-dong
Seven protective miRNA signatures for prognosis of cervical cancer
title Seven protective miRNA signatures for prognosis of cervical cancer
title_full Seven protective miRNA signatures for prognosis of cervical cancer
title_fullStr Seven protective miRNA signatures for prognosis of cervical cancer
title_full_unstemmed Seven protective miRNA signatures for prognosis of cervical cancer
title_short Seven protective miRNA signatures for prognosis of cervical cancer
title_sort seven protective mirna signatures for prognosis of cervical cancer
topic Research Paper
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC5302945/
https://www.ncbi.nlm.nih.gov/pubmed/27447860
http://dx.doi.org/10.18632/oncotarget.10678
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