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BFPTool: a software tool for analysis of Biomembrane Force Probe experiments

BACKGROUND: The Biomembrane Force Probe is an approachable experimental technique commonly used for single-molecule force spectroscopy and experiments on biological interfaces. The technique operates in the range of forces from 0.1 pN to 1000 pN. Experiments are typically repeated many times, condit...

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Autores principales: Šmít, Daniel, Fouquet, Coralie, Doulazmi, Mohamed, Pincet, Frédéric, Trembleau, Alain, Zapotocky, Martin
Formato: Online Artículo Texto
Lenguaje:English
Publicado: BioMed Central 2017
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC5304404/
https://www.ncbi.nlm.nih.gov/pubmed/28289540
http://dx.doi.org/10.1186/s13628-016-0033-2
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author Šmít, Daniel
Fouquet, Coralie
Doulazmi, Mohamed
Pincet, Frédéric
Trembleau, Alain
Zapotocky, Martin
author_facet Šmít, Daniel
Fouquet, Coralie
Doulazmi, Mohamed
Pincet, Frédéric
Trembleau, Alain
Zapotocky, Martin
author_sort Šmít, Daniel
collection PubMed
description BACKGROUND: The Biomembrane Force Probe is an approachable experimental technique commonly used for single-molecule force spectroscopy and experiments on biological interfaces. The technique operates in the range of forces from 0.1 pN to 1000 pN. Experiments are typically repeated many times, conditions are often not optimal, the captured video can be unstable and lose focus; this makes efficient analysis challenging, while out-of-the-box non-proprietary solutions are not freely available. RESULTS: This dedicated tool was developed to integrate and simplify the image processing and analysis of videomicroscopy recordings from BFP experiments. A novel processing feature, allowing the tracking of the pipette, was incorporated to address a limitation of preceding methods. Emphasis was placed on versatility and comprehensible user interface implemented in a graphical form. CONCLUSIONS: An integrated analytical tool was implemented to provide a faster, simpler and more convenient way to process and analyse BFP experiments. ELECTRONIC SUPPLEMENTARY MATERIAL: The online version of this article (doi:10.1186/s13628-016-0033-2) contains supplementary material, which is available to authorized users.
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spelling pubmed-53044042017-03-13 BFPTool: a software tool for analysis of Biomembrane Force Probe experiments Šmít, Daniel Fouquet, Coralie Doulazmi, Mohamed Pincet, Frédéric Trembleau, Alain Zapotocky, Martin BMC Biophys Software BACKGROUND: The Biomembrane Force Probe is an approachable experimental technique commonly used for single-molecule force spectroscopy and experiments on biological interfaces. The technique operates in the range of forces from 0.1 pN to 1000 pN. Experiments are typically repeated many times, conditions are often not optimal, the captured video can be unstable and lose focus; this makes efficient analysis challenging, while out-of-the-box non-proprietary solutions are not freely available. RESULTS: This dedicated tool was developed to integrate and simplify the image processing and analysis of videomicroscopy recordings from BFP experiments. A novel processing feature, allowing the tracking of the pipette, was incorporated to address a limitation of preceding methods. Emphasis was placed on versatility and comprehensible user interface implemented in a graphical form. CONCLUSIONS: An integrated analytical tool was implemented to provide a faster, simpler and more convenient way to process and analyse BFP experiments. ELECTRONIC SUPPLEMENTARY MATERIAL: The online version of this article (doi:10.1186/s13628-016-0033-2) contains supplementary material, which is available to authorized users. BioMed Central 2017-02-13 /pmc/articles/PMC5304404/ /pubmed/28289540 http://dx.doi.org/10.1186/s13628-016-0033-2 Text en © The Author(s) 2017 Open Access This article is distributed under the terms of the Creative Commons Attribution 4.0 International License(http://creativecommons.org/licenses/by/4.0/), which permits unrestricted use, distribution, and reproduction in any medium, provided you give appropriate credit to the original author(s) and the source, provide a link to the Creative Commons license, and indicate if changes were made. The Creative Commons Public Domain Dedication waiver (http://creativecommons.org/publicdomain/zero/1.0/) applies to the data made available in this article, unless otherwise stated.
spellingShingle Software
Šmít, Daniel
Fouquet, Coralie
Doulazmi, Mohamed
Pincet, Frédéric
Trembleau, Alain
Zapotocky, Martin
BFPTool: a software tool for analysis of Biomembrane Force Probe experiments
title BFPTool: a software tool for analysis of Biomembrane Force Probe experiments
title_full BFPTool: a software tool for analysis of Biomembrane Force Probe experiments
title_fullStr BFPTool: a software tool for analysis of Biomembrane Force Probe experiments
title_full_unstemmed BFPTool: a software tool for analysis of Biomembrane Force Probe experiments
title_short BFPTool: a software tool for analysis of Biomembrane Force Probe experiments
title_sort bfptool: a software tool for analysis of biomembrane force probe experiments
topic Software
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC5304404/
https://www.ncbi.nlm.nih.gov/pubmed/28289540
http://dx.doi.org/10.1186/s13628-016-0033-2
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