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Abundance distributions for tree species in Great Britain: A two‐stage approach to modeling abundance using species distribution modeling and random forest

High‐quality abundance data are expensive and time‐consuming to collect and often highly limited in availability. Nonetheless, accurate, high‐resolution abundance distributions are essential for many ecological applications ranging from species conservation to epidemiology. Producing models that can...

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Autores principales: Hill, Louise, Hector, Andy, Hemery, Gabriel, Smart, Simon, Tanadini, Matteo, Brown, Nick
Formato: Online Artículo Texto
Lenguaje:English
Publicado: John Wiley and Sons Inc. 2017
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC5306018/
https://www.ncbi.nlm.nih.gov/pubmed/28303176
http://dx.doi.org/10.1002/ece3.2661
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author Hill, Louise
Hector, Andy
Hemery, Gabriel
Smart, Simon
Tanadini, Matteo
Brown, Nick
author_facet Hill, Louise
Hector, Andy
Hemery, Gabriel
Smart, Simon
Tanadini, Matteo
Brown, Nick
author_sort Hill, Louise
collection PubMed
description High‐quality abundance data are expensive and time‐consuming to collect and often highly limited in availability. Nonetheless, accurate, high‐resolution abundance distributions are essential for many ecological applications ranging from species conservation to epidemiology. Producing models that can predict abundance well, with good resolution over large areas, has therefore been an important aim in ecology, but poses considerable challenges. We present a two‐stage approach to modeling abundance, combining two established techniques. First, we produce ensemble species distribution models (SDMs) of trees in Great Britain at a fine resolution, using much more common presence–absence data and key environmental variables. We then use random forest regression to predict abundance by linking the results of the SDMs to a much smaller amount of abundance data. We show that this method performs well in predicting the abundance of 20 of 25 tested British tree species, a group that is generally considered challenging for modeling distributions due to the strong influence of human activities. Maps of predicted tree abundance for the whole of Great Britain are provided at 1 km(2) resolution. Abundance maps have a far wider variety of applications than presence‐only maps, and these maps should allow improvements to aspects of woodland management and conservation including analysis of habitats and ecosystem functioning, epidemiology, and disease management, providing a useful contribution to the protection of British trees. We also provide complete R scripts to facilitate application of the approach to other scenarios.
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spelling pubmed-53060182017-03-16 Abundance distributions for tree species in Great Britain: A two‐stage approach to modeling abundance using species distribution modeling and random forest Hill, Louise Hector, Andy Hemery, Gabriel Smart, Simon Tanadini, Matteo Brown, Nick Ecol Evol Original Research High‐quality abundance data are expensive and time‐consuming to collect and often highly limited in availability. Nonetheless, accurate, high‐resolution abundance distributions are essential for many ecological applications ranging from species conservation to epidemiology. Producing models that can predict abundance well, with good resolution over large areas, has therefore been an important aim in ecology, but poses considerable challenges. We present a two‐stage approach to modeling abundance, combining two established techniques. First, we produce ensemble species distribution models (SDMs) of trees in Great Britain at a fine resolution, using much more common presence–absence data and key environmental variables. We then use random forest regression to predict abundance by linking the results of the SDMs to a much smaller amount of abundance data. We show that this method performs well in predicting the abundance of 20 of 25 tested British tree species, a group that is generally considered challenging for modeling distributions due to the strong influence of human activities. Maps of predicted tree abundance for the whole of Great Britain are provided at 1 km(2) resolution. Abundance maps have a far wider variety of applications than presence‐only maps, and these maps should allow improvements to aspects of woodland management and conservation including analysis of habitats and ecosystem functioning, epidemiology, and disease management, providing a useful contribution to the protection of British trees. We also provide complete R scripts to facilitate application of the approach to other scenarios. John Wiley and Sons Inc. 2017-01-22 /pmc/articles/PMC5306018/ /pubmed/28303176 http://dx.doi.org/10.1002/ece3.2661 Text en © 2017 The Authors. Ecology and Evolution published by John Wiley & Sons Ltd. This is an open access article under the terms of the Creative Commons Attribution (http://creativecommons.org/licenses/by/4.0/) License, which permits use, distribution and reproduction in any medium, provided the original work is properly cited.
spellingShingle Original Research
Hill, Louise
Hector, Andy
Hemery, Gabriel
Smart, Simon
Tanadini, Matteo
Brown, Nick
Abundance distributions for tree species in Great Britain: A two‐stage approach to modeling abundance using species distribution modeling and random forest
title Abundance distributions for tree species in Great Britain: A two‐stage approach to modeling abundance using species distribution modeling and random forest
title_full Abundance distributions for tree species in Great Britain: A two‐stage approach to modeling abundance using species distribution modeling and random forest
title_fullStr Abundance distributions for tree species in Great Britain: A two‐stage approach to modeling abundance using species distribution modeling and random forest
title_full_unstemmed Abundance distributions for tree species in Great Britain: A two‐stage approach to modeling abundance using species distribution modeling and random forest
title_short Abundance distributions for tree species in Great Britain: A two‐stage approach to modeling abundance using species distribution modeling and random forest
title_sort abundance distributions for tree species in great britain: a two‐stage approach to modeling abundance using species distribution modeling and random forest
topic Original Research
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC5306018/
https://www.ncbi.nlm.nih.gov/pubmed/28303176
http://dx.doi.org/10.1002/ece3.2661
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