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SpineCreator: a Graphical User Interface for the Creation of Layered Neural Models

There is a growing requirement in computational neuroscience for tools that permit collaborative model building, model sharing, combining existing models into a larger system (multi-scale model integration), and are able to simulate models using a variety of simulation engines and hardware platforms...

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Detalles Bibliográficos
Autores principales: Cope, A. J., Richmond, P., James, S. S., Gurney, K., Allerton, D. J.
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Springer US 2016
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC5306153/
https://www.ncbi.nlm.nih.gov/pubmed/27628934
http://dx.doi.org/10.1007/s12021-016-9311-z
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author Cope, A. J.
Richmond, P.
James, S. S.
Gurney, K.
Allerton, D. J.
author_facet Cope, A. J.
Richmond, P.
James, S. S.
Gurney, K.
Allerton, D. J.
author_sort Cope, A. J.
collection PubMed
description There is a growing requirement in computational neuroscience for tools that permit collaborative model building, model sharing, combining existing models into a larger system (multi-scale model integration), and are able to simulate models using a variety of simulation engines and hardware platforms. Layered XML model specification formats solve many of these problems, however they are difficult to write and visualise without tools. Here we describe a new graphical software tool, SpineCreator, which facilitates the creation and visualisation of layered models of point spiking neurons or rate coded neurons without requiring the need for programming. We demonstrate the tool through the reproduction and visualisation of published models and show simulation results using code generation interfaced directly into SpineCreator. As a unique application for the graphical creation of neural networks, SpineCreator represents an important step forward for neuronal modelling.
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spelling pubmed-53061532017-02-24 SpineCreator: a Graphical User Interface for the Creation of Layered Neural Models Cope, A. J. Richmond, P. James, S. S. Gurney, K. Allerton, D. J. Neuroinformatics Software Original Article There is a growing requirement in computational neuroscience for tools that permit collaborative model building, model sharing, combining existing models into a larger system (multi-scale model integration), and are able to simulate models using a variety of simulation engines and hardware platforms. Layered XML model specification formats solve many of these problems, however they are difficult to write and visualise without tools. Here we describe a new graphical software tool, SpineCreator, which facilitates the creation and visualisation of layered models of point spiking neurons or rate coded neurons without requiring the need for programming. We demonstrate the tool through the reproduction and visualisation of published models and show simulation results using code generation interfaced directly into SpineCreator. As a unique application for the graphical creation of neural networks, SpineCreator represents an important step forward for neuronal modelling. Springer US 2016-09-15 2017 /pmc/articles/PMC5306153/ /pubmed/27628934 http://dx.doi.org/10.1007/s12021-016-9311-z Text en © The Author(s) 2016 Open Access This article is distributed under the terms of the Creative Commons Attribution 4.0 International License (http://creativecommons.org/licenses/by/4.0/), which permits unrestricted use, distribution, and reproduction in any medium, provided you give appropriate credit to the original author(s) and the source, provide a link to the Creative Commons license, and indicate if changes were made.
spellingShingle Software Original Article
Cope, A. J.
Richmond, P.
James, S. S.
Gurney, K.
Allerton, D. J.
SpineCreator: a Graphical User Interface for the Creation of Layered Neural Models
title SpineCreator: a Graphical User Interface for the Creation of Layered Neural Models
title_full SpineCreator: a Graphical User Interface for the Creation of Layered Neural Models
title_fullStr SpineCreator: a Graphical User Interface for the Creation of Layered Neural Models
title_full_unstemmed SpineCreator: a Graphical User Interface for the Creation of Layered Neural Models
title_short SpineCreator: a Graphical User Interface for the Creation of Layered Neural Models
title_sort spinecreator: a graphical user interface for the creation of layered neural models
topic Software Original Article
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC5306153/
https://www.ncbi.nlm.nih.gov/pubmed/27628934
http://dx.doi.org/10.1007/s12021-016-9311-z
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