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A Statistical Method to Distinguish Functional Brain Networks
One major problem in neuroscience is the comparison of functional brain networks of different populations, e.g., distinguishing the networks of controls and patients. Traditional algorithms are based on search for isomorphism between networks, assuming that they are deterministic. However, biologica...
Autores principales: | , , |
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Formato: | Online Artículo Texto |
Lenguaje: | English |
Publicado: |
Frontiers Media S.A.
2017
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Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC5307493/ https://www.ncbi.nlm.nih.gov/pubmed/28261045 http://dx.doi.org/10.3389/fnins.2017.00066 |
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author | Fujita, André Vidal, Maciel C. Takahashi, Daniel Y. |
author_facet | Fujita, André Vidal, Maciel C. Takahashi, Daniel Y. |
author_sort | Fujita, André |
collection | PubMed |
description | One major problem in neuroscience is the comparison of functional brain networks of different populations, e.g., distinguishing the networks of controls and patients. Traditional algorithms are based on search for isomorphism between networks, assuming that they are deterministic. However, biological networks present randomness that cannot be well modeled by those algorithms. For instance, functional brain networks of distinct subjects of the same population can be different due to individual characteristics. Moreover, networks of subjects from different populations can be generated through the same stochastic process. Thus, a better hypothesis is that networks are generated by random processes. In this case, subjects from the same group are samples from the same random process, whereas subjects from different groups are generated by distinct processes. Using this idea, we developed a statistical test called ANOGVA to test whether two or more populations of graphs are generated by the same random graph model. Our simulations' results demonstrate that we can precisely control the rate of false positives and that the test is powerful to discriminate random graphs generated by different models and parameters. The method also showed to be robust for unbalanced data. As an example, we applied ANOGVA to an fMRI dataset composed of controls and patients diagnosed with autism or Asperger. ANOGVA identified the cerebellar functional sub-network as statistically different between controls and autism (p < 0.001). |
format | Online Article Text |
id | pubmed-5307493 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2017 |
publisher | Frontiers Media S.A. |
record_format | MEDLINE/PubMed |
spelling | pubmed-53074932017-03-03 A Statistical Method to Distinguish Functional Brain Networks Fujita, André Vidal, Maciel C. Takahashi, Daniel Y. Front Neurosci Neuroscience One major problem in neuroscience is the comparison of functional brain networks of different populations, e.g., distinguishing the networks of controls and patients. Traditional algorithms are based on search for isomorphism between networks, assuming that they are deterministic. However, biological networks present randomness that cannot be well modeled by those algorithms. For instance, functional brain networks of distinct subjects of the same population can be different due to individual characteristics. Moreover, networks of subjects from different populations can be generated through the same stochastic process. Thus, a better hypothesis is that networks are generated by random processes. In this case, subjects from the same group are samples from the same random process, whereas subjects from different groups are generated by distinct processes. Using this idea, we developed a statistical test called ANOGVA to test whether two or more populations of graphs are generated by the same random graph model. Our simulations' results demonstrate that we can precisely control the rate of false positives and that the test is powerful to discriminate random graphs generated by different models and parameters. The method also showed to be robust for unbalanced data. As an example, we applied ANOGVA to an fMRI dataset composed of controls and patients diagnosed with autism or Asperger. ANOGVA identified the cerebellar functional sub-network as statistically different between controls and autism (p < 0.001). Frontiers Media S.A. 2017-02-14 /pmc/articles/PMC5307493/ /pubmed/28261045 http://dx.doi.org/10.3389/fnins.2017.00066 Text en Copyright © 2017 Fujita, Vidal and Takahashi. http://creativecommons.org/licenses/by/4.0/ This is an open-access article distributed under the terms of the Creative Commons Attribution License (CC BY). The use, distribution or reproduction in other forums is permitted, provided the original author(s) or licensor are credited and that the original publication in this journal is cited, in accordance with accepted academic practice. No use, distribution or reproduction is permitted which does not comply with these terms. |
spellingShingle | Neuroscience Fujita, André Vidal, Maciel C. Takahashi, Daniel Y. A Statistical Method to Distinguish Functional Brain Networks |
title | A Statistical Method to Distinguish Functional Brain Networks |
title_full | A Statistical Method to Distinguish Functional Brain Networks |
title_fullStr | A Statistical Method to Distinguish Functional Brain Networks |
title_full_unstemmed | A Statistical Method to Distinguish Functional Brain Networks |
title_short | A Statistical Method to Distinguish Functional Brain Networks |
title_sort | statistical method to distinguish functional brain networks |
topic | Neuroscience |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC5307493/ https://www.ncbi.nlm.nih.gov/pubmed/28261045 http://dx.doi.org/10.3389/fnins.2017.00066 |
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