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GIFT-Cloud: A data sharing and collaboration platform for medical imaging research

OBJECTIVES: Clinical imaging data are essential for developing research software for computer-aided diagnosis, treatment planning and image-guided surgery, yet existing systems are poorly suited for data sharing between healthcare and academia: research systems rarely provide an integrated approach...

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Autores principales: Doel, Tom, Shakir, Dzhoshkun I., Pratt, Rosalind, Aertsen, Michael, Moggridge, James, Bellon, Erwin, David, Anna L., Deprest, Jan, Vercauteren, Tom, Ourselin, Sébastien
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Elsevier Scientific Publishers 2017
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC5312116/
https://www.ncbi.nlm.nih.gov/pubmed/28187889
http://dx.doi.org/10.1016/j.cmpb.2016.11.004
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author Doel, Tom
Shakir, Dzhoshkun I.
Pratt, Rosalind
Aertsen, Michael
Moggridge, James
Bellon, Erwin
David, Anna L.
Deprest, Jan
Vercauteren, Tom
Ourselin, Sébastien
author_facet Doel, Tom
Shakir, Dzhoshkun I.
Pratt, Rosalind
Aertsen, Michael
Moggridge, James
Bellon, Erwin
David, Anna L.
Deprest, Jan
Vercauteren, Tom
Ourselin, Sébastien
author_sort Doel, Tom
collection PubMed
description OBJECTIVES: Clinical imaging data are essential for developing research software for computer-aided diagnosis, treatment planning and image-guided surgery, yet existing systems are poorly suited for data sharing between healthcare and academia: research systems rarely provide an integrated approach for data exchange with clinicians; hospital systems are focused towards clinical patient care with limited access for external researchers; and safe haven environments are not well suited to algorithm development. We have established GIFT-Cloud, a data and medical image sharing platform, to meet the needs of GIFT-Surg, an international research collaboration that is developing novel imaging methods for fetal surgery. GIFT-Cloud also has general applicability to other areas of imaging research. METHODS: GIFT-Cloud builds upon well-established cross-platform technologies. The Server provides secure anonymised data storage, direct web-based data access and a REST API for integrating external software. The Uploader provides automated on-site anonymisation, encryption and data upload. Gateways provide a seamless process for uploading medical data from clinical systems to the research server. RESULTS: GIFT-Cloud has been implemented in a multi-centre study for fetal medicine research. We present a case study of placental segmentation for pre-operative surgical planning, showing how GIFT-Cloud underpins the research and integrates with the clinical workflow. CONCLUSIONS: GIFT-Cloud simplifies the transfer of imaging data from clinical to research institutions, facilitating the development and validation of medical research software and the sharing of results back to the clinical partners. GIFT-Cloud supports collaboration between multiple healthcare and research institutions while satisfying the demands of patient confidentiality, data security and data ownership.
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spelling pubmed-53121162017-02-22 GIFT-Cloud: A data sharing and collaboration platform for medical imaging research Doel, Tom Shakir, Dzhoshkun I. Pratt, Rosalind Aertsen, Michael Moggridge, James Bellon, Erwin David, Anna L. Deprest, Jan Vercauteren, Tom Ourselin, Sébastien Comput Methods Programs Biomed Article OBJECTIVES: Clinical imaging data are essential for developing research software for computer-aided diagnosis, treatment planning and image-guided surgery, yet existing systems are poorly suited for data sharing between healthcare and academia: research systems rarely provide an integrated approach for data exchange with clinicians; hospital systems are focused towards clinical patient care with limited access for external researchers; and safe haven environments are not well suited to algorithm development. We have established GIFT-Cloud, a data and medical image sharing platform, to meet the needs of GIFT-Surg, an international research collaboration that is developing novel imaging methods for fetal surgery. GIFT-Cloud also has general applicability to other areas of imaging research. METHODS: GIFT-Cloud builds upon well-established cross-platform technologies. The Server provides secure anonymised data storage, direct web-based data access and a REST API for integrating external software. The Uploader provides automated on-site anonymisation, encryption and data upload. Gateways provide a seamless process for uploading medical data from clinical systems to the research server. RESULTS: GIFT-Cloud has been implemented in a multi-centre study for fetal medicine research. We present a case study of placental segmentation for pre-operative surgical planning, showing how GIFT-Cloud underpins the research and integrates with the clinical workflow. CONCLUSIONS: GIFT-Cloud simplifies the transfer of imaging data from clinical to research institutions, facilitating the development and validation of medical research software and the sharing of results back to the clinical partners. GIFT-Cloud supports collaboration between multiple healthcare and research institutions while satisfying the demands of patient confidentiality, data security and data ownership. Elsevier Scientific Publishers 2017-02 /pmc/articles/PMC5312116/ /pubmed/28187889 http://dx.doi.org/10.1016/j.cmpb.2016.11.004 Text en © 2016 The Authors http://creativecommons.org/licenses/by/4.0/ This is an open access article under the CC BY license (http://creativecommons.org/licenses/by/4.0/).
spellingShingle Article
Doel, Tom
Shakir, Dzhoshkun I.
Pratt, Rosalind
Aertsen, Michael
Moggridge, James
Bellon, Erwin
David, Anna L.
Deprest, Jan
Vercauteren, Tom
Ourselin, Sébastien
GIFT-Cloud: A data sharing and collaboration platform for medical imaging research
title GIFT-Cloud: A data sharing and collaboration platform for medical imaging research
title_full GIFT-Cloud: A data sharing and collaboration platform for medical imaging research
title_fullStr GIFT-Cloud: A data sharing and collaboration platform for medical imaging research
title_full_unstemmed GIFT-Cloud: A data sharing and collaboration platform for medical imaging research
title_short GIFT-Cloud: A data sharing and collaboration platform for medical imaging research
title_sort gift-cloud: a data sharing and collaboration platform for medical imaging research
topic Article
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC5312116/
https://www.ncbi.nlm.nih.gov/pubmed/28187889
http://dx.doi.org/10.1016/j.cmpb.2016.11.004
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