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Towards on-the-fly data post-processing for real-time tomographic imaging at TOMCAT

Sub-second full-field tomographic microscopy at third-generation synchrotron sources is a reality, opening up new possibilities for the study of dynamic systems in different fields. Sustained elevated data rates of multiple GB/s in tomographic experiments will become even more common at diffraction-...

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Autores principales: Marone, Federica, Studer, Alain, Billich, Heiner, Sala, Leonardo, Stampanoni, Marco
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Springer International Publishing 2017
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC5313565/
https://www.ncbi.nlm.nih.gov/pubmed/28261539
http://dx.doi.org/10.1186/s40679-016-0035-9
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author Marone, Federica
Studer, Alain
Billich, Heiner
Sala, Leonardo
Stampanoni, Marco
author_facet Marone, Federica
Studer, Alain
Billich, Heiner
Sala, Leonardo
Stampanoni, Marco
author_sort Marone, Federica
collection PubMed
description Sub-second full-field tomographic microscopy at third-generation synchrotron sources is a reality, opening up new possibilities for the study of dynamic systems in different fields. Sustained elevated data rates of multiple GB/s in tomographic experiments will become even more common at diffraction-limited storage rings, coming in operation soon. The computational tools necessary for the post-processing of raw tomographic projections have generally not experienced the same efficiency increase as the experimental facilities, hindering optimal exploitation of this new potential. We present here a fast, flexible, and user-friendly post-processing pipeline overcoming this efficiency mismatch and delivering reconstructed tomographic datasets just few seconds after the data have been acquired, enabling fast parameter and image quality evaluation as well as efficient post-processing of TBs of tomographic data. With this new tool, also able to accept a stream of data directly from a detector, few selected tomographic slices are available in less than half a second, providing advanced previewing capabilities paving the way to new concepts for on-the-fly control of dynamic experiments.
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spelling pubmed-53135652017-03-01 Towards on-the-fly data post-processing for real-time tomographic imaging at TOMCAT Marone, Federica Studer, Alain Billich, Heiner Sala, Leonardo Stampanoni, Marco Adv Struct Chem Imaging Research Sub-second full-field tomographic microscopy at third-generation synchrotron sources is a reality, opening up new possibilities for the study of dynamic systems in different fields. Sustained elevated data rates of multiple GB/s in tomographic experiments will become even more common at diffraction-limited storage rings, coming in operation soon. The computational tools necessary for the post-processing of raw tomographic projections have generally not experienced the same efficiency increase as the experimental facilities, hindering optimal exploitation of this new potential. We present here a fast, flexible, and user-friendly post-processing pipeline overcoming this efficiency mismatch and delivering reconstructed tomographic datasets just few seconds after the data have been acquired, enabling fast parameter and image quality evaluation as well as efficient post-processing of TBs of tomographic data. With this new tool, also able to accept a stream of data directly from a detector, few selected tomographic slices are available in less than half a second, providing advanced previewing capabilities paving the way to new concepts for on-the-fly control of dynamic experiments. Springer International Publishing 2017-01-03 2017 /pmc/articles/PMC5313565/ /pubmed/28261539 http://dx.doi.org/10.1186/s40679-016-0035-9 Text en © The Author(s) 2017 Open AccessThis article is distributed under the terms of the Creative Commons Attribution 4.0 International License (http://creativecommons.org/licenses/by/4.0/), which permits unrestricted use, distribution, and reproduction in any medium, provided you give appropriate credit to the original author(s) and the source, provide a link to the Creative Commons license, and indicate if changes were made.
spellingShingle Research
Marone, Federica
Studer, Alain
Billich, Heiner
Sala, Leonardo
Stampanoni, Marco
Towards on-the-fly data post-processing for real-time tomographic imaging at TOMCAT
title Towards on-the-fly data post-processing for real-time tomographic imaging at TOMCAT
title_full Towards on-the-fly data post-processing for real-time tomographic imaging at TOMCAT
title_fullStr Towards on-the-fly data post-processing for real-time tomographic imaging at TOMCAT
title_full_unstemmed Towards on-the-fly data post-processing for real-time tomographic imaging at TOMCAT
title_short Towards on-the-fly data post-processing for real-time tomographic imaging at TOMCAT
title_sort towards on-the-fly data post-processing for real-time tomographic imaging at tomcat
topic Research
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC5313565/
https://www.ncbi.nlm.nih.gov/pubmed/28261539
http://dx.doi.org/10.1186/s40679-016-0035-9
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