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SYRMEP Tomo Project: a graphical user interface for customizing CT reconstruction workflows
When considering the acquisition of experimental synchrotron radiation (SR) X-ray CT data, the reconstruction workflow cannot be limited to the essential computational steps of flat fielding and filtered back projection (FBP). More refined image processing is often required, usually to compensate ar...
Autores principales: | , , , , , , , |
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Formato: | Online Artículo Texto |
Lenguaje: | English |
Publicado: |
Springer International Publishing
2017
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Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC5313567/ https://www.ncbi.nlm.nih.gov/pubmed/28261542 http://dx.doi.org/10.1186/s40679-016-0036-8 |
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author | Brun, Francesco Massimi, Lorenzo Fratini, Michela Dreossi, Diego Billé, Fulvio Accardo, Agostino Pugliese, Roberto Cedola, Alessia |
author_facet | Brun, Francesco Massimi, Lorenzo Fratini, Michela Dreossi, Diego Billé, Fulvio Accardo, Agostino Pugliese, Roberto Cedola, Alessia |
author_sort | Brun, Francesco |
collection | PubMed |
description | When considering the acquisition of experimental synchrotron radiation (SR) X-ray CT data, the reconstruction workflow cannot be limited to the essential computational steps of flat fielding and filtered back projection (FBP). More refined image processing is often required, usually to compensate artifacts and enhance the quality of the reconstructed images. In principle, it would be desirable to optimize the reconstruction workflow at the facility during the experiment (beamtime). However, several practical factors affect the image reconstruction part of the experiment and users are likely to conclude the beamtime with sub-optimal reconstructed images. Through an example of application, this article presents SYRMEP Tomo Project (STP), an open-source software tool conceived to let users design custom CT reconstruction workflows. STP has been designed for post-beamtime (off-line use) and for a new reconstruction of past archived data at user’s home institution where simple computing resources are available. Releases of the software can be downloaded at the Elettra Scientific Computing group GitHub repository https://github.com/ElettraSciComp/STP-Gui. |
format | Online Article Text |
id | pubmed-5313567 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2017 |
publisher | Springer International Publishing |
record_format | MEDLINE/PubMed |
spelling | pubmed-53135672017-03-01 SYRMEP Tomo Project: a graphical user interface for customizing CT reconstruction workflows Brun, Francesco Massimi, Lorenzo Fratini, Michela Dreossi, Diego Billé, Fulvio Accardo, Agostino Pugliese, Roberto Cedola, Alessia Adv Struct Chem Imaging Research When considering the acquisition of experimental synchrotron radiation (SR) X-ray CT data, the reconstruction workflow cannot be limited to the essential computational steps of flat fielding and filtered back projection (FBP). More refined image processing is often required, usually to compensate artifacts and enhance the quality of the reconstructed images. In principle, it would be desirable to optimize the reconstruction workflow at the facility during the experiment (beamtime). However, several practical factors affect the image reconstruction part of the experiment and users are likely to conclude the beamtime with sub-optimal reconstructed images. Through an example of application, this article presents SYRMEP Tomo Project (STP), an open-source software tool conceived to let users design custom CT reconstruction workflows. STP has been designed for post-beamtime (off-line use) and for a new reconstruction of past archived data at user’s home institution where simple computing resources are available. Releases of the software can be downloaded at the Elettra Scientific Computing group GitHub repository https://github.com/ElettraSciComp/STP-Gui. Springer International Publishing 2017-01-19 2017 /pmc/articles/PMC5313567/ /pubmed/28261542 http://dx.doi.org/10.1186/s40679-016-0036-8 Text en © The Author(s) 2017 Open AccessThis article is distributed under the terms of the Creative Commons Attribution 4.0 International License (http://creativecommons.org/licenses/by/4.0/), which permits unrestricted use, distribution, and reproduction in any medium, provided you give appropriate credit to the original author(s) and the source, provide a link to the Creative Commons license, and indicate if changes were made. |
spellingShingle | Research Brun, Francesco Massimi, Lorenzo Fratini, Michela Dreossi, Diego Billé, Fulvio Accardo, Agostino Pugliese, Roberto Cedola, Alessia SYRMEP Tomo Project: a graphical user interface for customizing CT reconstruction workflows |
title | SYRMEP Tomo Project: a graphical user interface for customizing CT reconstruction workflows |
title_full | SYRMEP Tomo Project: a graphical user interface for customizing CT reconstruction workflows |
title_fullStr | SYRMEP Tomo Project: a graphical user interface for customizing CT reconstruction workflows |
title_full_unstemmed | SYRMEP Tomo Project: a graphical user interface for customizing CT reconstruction workflows |
title_short | SYRMEP Tomo Project: a graphical user interface for customizing CT reconstruction workflows |
title_sort | syrmep tomo project: a graphical user interface for customizing ct reconstruction workflows |
topic | Research |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC5313567/ https://www.ncbi.nlm.nih.gov/pubmed/28261542 http://dx.doi.org/10.1186/s40679-016-0036-8 |
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