Cargando…

RPAN: rice pan-genome browser for ∼3000 rice genomes

A pan-genome is the union of the gene sets of all the individuals of a clade or a species and it provides a new dimension of genome complexity with the presence/absence variations (PAVs) of genes among these genomes. With the progress of sequencing technologies, pan-genome study is becoming affordab...

Descripción completa

Detalles Bibliográficos
Autores principales:	Sun, Chen, Hu, Zhiqiang, Zheng, Tianqing, Lu, Kuangchen, Zhao, Yue, Wang, Wensheng, Shi, Jianxin, Wang, Chunchao, Lu, Jinyuan, Zhang, Dabing, Li, Zhikang, Wei, Chaochun
Formato:	Online Artículo Texto
Lenguaje:	English
Publicado:	Oxford University Press 2017
Materias:	Data Resources and Analyses
Acceso en línea:	https://www.ncbi.nlm.nih.gov/pmc/articles/PMC5314802/ https://www.ncbi.nlm.nih.gov/pubmed/27940610 http://dx.doi.org/10.1093/nar/gkw958

Ejemplares similares

Structural variants in 3000 rice genomes
por: Fuentes, Roven Rommel, et al.
Publicado: (2019)

Long-read sequencing of 111 rice genomes reveals significantly larger pan-genomes
por: Zhang, Fan, et al.
Publicado: (2022)

iSMOD: an integrative browser for image-based single-cell multi-omics data
por: Zhang, Weihang, et al.
Publicado: (2023)

A rice variation map derived from 10 548 rice accessions reveals the importance of rare variants
por: Wang, Tianyi, et al.
Publicado: (2023)

SNP-Seek database of SNPs derived from 3000 rice genomes
por: Alexandrov, Nickolai, et al.
Publicado: (2014)

The 3,000 rice genomes project
Publicado: (2014)

Genome-Wide Association Study Dissects Resistance Loci against Bacterial Blight in a Diverse Rice Panel from the 3000 Rice Genomes Project
por: Lu, Jialing, et al.
Publicado: (2021)

Novel sequences, structural variations and gene presence variations of Asian cultivated rice
por: Hu, Zhiqiang, et al.
Publicado: (2018)

Tree House Explorer: A Novel Genome Browser for Phylogenomics
por: Harris, Andrew J, et al.
Publicado: (2022)

Rice-Map: a new-generation rice genome browser
por: Wang, Jun, et al.
Publicado: (2011)

Genome-wide dynamics of alternative polyadenylation in rice
por: Fu, Haihui, et al.
Publicado: (2016)

Retrotranspositional landscape of Asian rice revealed by 3000 genomes
por: Carpentier, Marie-Christine, et al.
Publicado: (2019)

Comparing genomic and epigenomic features across species using the WashU Comparative Epigenome Browser
por: Zhuo, Xiaoyu, et al.
Publicado: (2023)

Achieving pan-microbiome biological insights via the dbBact knowledge base
por: Amir, Amnon, et al.
Publicado: (2023)

The 3,000 rice genomes project: new opportunities and challenges for future rice research
por: Li, Jia-Yang, et al.
Publicado: (2014)

LncMAP: Pan-cancer atlas of long noncoding RNA-mediated transcriptional network perturbations
por: Li, Yongsheng, et al.
Publicado: (2018)

Pan-cancer transcriptomic analysis dissects immune and proliferative functions of APOBEC3 cytidine deaminases
por: Ng, Joseph C F, et al.
Publicado: (2019)

The Escherichia coli Fur pan-regulon has few conserved but many unique regulatory targets
por: Gao, Ye, et al.
Publicado: (2023)

Dissecting the sources of gene expression variation in a pan-cancer analysis identifies novel regulatory mutations
por: Sharma, Anchal, et al.
Publicado: (2018)

Characterizing mobile element insertions in 5675 genomes
por: Niu, Yiwei, et al.
Publicado: (2022)

Unique transposon landscapes are pervasive across Drosophila melanogaster genomes
por: Rahman, Reazur, et al.
Publicado: (2015)

An integrated approach for genome annotation of the eukaryotic thermophile Chaetomium thermophilum
por: Bock, Thomas, et al.
Publicado: (2014)

Rice TOGO Browser: A Platform to Retrieve Integrated Information on Rice Functional and Applied Genomics
por: Nagamura, Yoshiaki, et al.
Publicado: (2011)

In silico prediction of splice-altering single nucleotide variants in the human genome
por: Jian, Xueqiu, et al.
Publicado: (2014)

Survey of protein–DNA interactions in Aspergillus oryzae on a genomic scale
por: Wang, Chao, et al.
Publicado: (2015)

Goldmine integrates information placing genomic ranges into meaningful biological contexts
por: Bhasin, Jeffrey M., et al.
Publicado: (2016)

Whole genome experimental maps of DNA G-quadruplexes in multiple species
por: Marsico, Giovanni, et al.
Publicado: (2019)

Landscape of mobile genetic elements and their antibiotic resistance cargo in prokaryotic genomes
por: Khedkar, Supriya, et al.
Publicado: (2022)

Improved sgRNA design in bacteria via genome-wide activity profiling
por: Guo, Jiahui, et al.
Publicado: (2018)

Deep genome annotation of the opportunistic human pathogen Streptococcus pneumoniae D39
por: Slager, Jelle, et al.
Publicado: (2018)

Transcription profile of Escherichia coli: genomic SELEX search for regulatory targets of transcription factors
por: Ishihama, Akira, et al.
Publicado: (2016)

Enabling the democratization of the genomics revolution with a fully integrated web-based bioinformatics platform
por: Li, Po-E, et al.
Publicado: (2017)

Haplotype-resolved and integrated genome analysis of the cancer cell line HepG2
por: Zhou, Bo, et al.
Publicado: (2019)

Function-driven discovery of disease genes in zebrafish using an integrated genomics big data resource
por: Shim, Hongseok, et al.
Publicado: (2016)

Computational resources to define alleles and altered regulatory motifs at genomically edited candidate response elements
por: Ehmsen, Kirk T, et al.
Publicado: (2021)

Genome-wide characterization of human minisatellite VNTRs: population-specific alleles and gene expression differences
por: Eslami Rasekh, Marzieh, et al.
Publicado: (2021)

DrosOmics: A Browser to Explore -omics Variation Across High-Quality Reference Genomes From Natural Populations of Drosophila melanogaster
por: Coronado-Zamora, Marta, et al.
Publicado: (2023)

Updating genome annotation for the microbial cell factory Aspergillus niger using gene co-expression networks
por: Schäpe, P, et al.
Publicado: (2019)

Primary transcriptome and translatome analysis determines transcriptional and translational regulatory elements encoded in the Streptomyces clavuligerus genome
por: Hwang, Soonkyu, et al.
Publicado: (2019)

Prevalence and architecture of posttranscriptionally impaired synonymous mutations in 8,320 genomes across 22 cancer types
por: Teng, Huajing, et al.
Publicado: (2020)

Cannot write session to /tmp/vufind_sessions/sess_1c7if944ltmv9t2hk6lk26se4d