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Characterization of microsatellite markers in two exploited African trees, Entandrophragma candollei and E. utile (Meliaceae)(1)

PREMISE OF THE STUDY: Multiplexes of nuclear microsatellite primers were developed to investigate population genetic structure and diversity in two exploited African rainforest trees: Entandrophragma candollei and E. utile (Meliaceae). METHODS AND RESULTS: Microsatellite isolation was performed simu...

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Autores principales: Monthe, Franck S., Duminil, Jérôme, Tosso, Félicien, Migliore, Jérémy, Hardy, Olivier J.
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Botanical Society of America 2017
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC5315381/
https://www.ncbi.nlm.nih.gov/pubmed/28224058
http://dx.doi.org/10.3732/apps.1600130
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author Monthe, Franck S.
Duminil, Jérôme
Tosso, Félicien
Migliore, Jérémy
Hardy, Olivier J.
author_facet Monthe, Franck S.
Duminil, Jérôme
Tosso, Félicien
Migliore, Jérémy
Hardy, Olivier J.
author_sort Monthe, Franck S.
collection PubMed
description PREMISE OF THE STUDY: Multiplexes of nuclear microsatellite primers were developed to investigate population genetic structure and diversity in two exploited African rainforest trees: Entandrophragma candollei and E. utile (Meliaceae). METHODS AND RESULTS: Microsatellite isolation was performed simultaneously on two nonenriched genomic libraries after next-generation sequencing. We developed 16 and 22 polymorphic markers for E. candollei and E. utile in three and four multiplexes, respectively. The number of alleles ranged from two to 17 for E. candollei and from three to 19 for E. utile. Mean expected and observed heterozygosity ranged between 0.75 ± 0.13 and 0.55 ± 0.23 for E. candollei and between 0.73 ± 0.10 and 0.49 ± 0.2 for E. utile. CONCLUSIONS: These sets of nuclear microsatellite markers constitute useful tools for exploring gene flow patterns in these two Entandrophragma species.
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spelling pubmed-53153812017-02-21 Characterization of microsatellite markers in two exploited African trees, Entandrophragma candollei and E. utile (Meliaceae)(1) Monthe, Franck S. Duminil, Jérôme Tosso, Félicien Migliore, Jérémy Hardy, Olivier J. Appl Plant Sci Primer Note PREMISE OF THE STUDY: Multiplexes of nuclear microsatellite primers were developed to investigate population genetic structure and diversity in two exploited African rainforest trees: Entandrophragma candollei and E. utile (Meliaceae). METHODS AND RESULTS: Microsatellite isolation was performed simultaneously on two nonenriched genomic libraries after next-generation sequencing. We developed 16 and 22 polymorphic markers for E. candollei and E. utile in three and four multiplexes, respectively. The number of alleles ranged from two to 17 for E. candollei and from three to 19 for E. utile. Mean expected and observed heterozygosity ranged between 0.75 ± 0.13 and 0.55 ± 0.23 for E. candollei and between 0.73 ± 0.10 and 0.49 ± 0.2 for E. utile. CONCLUSIONS: These sets of nuclear microsatellite markers constitute useful tools for exploring gene flow patterns in these two Entandrophragma species. Botanical Society of America 2017-02-09 /pmc/articles/PMC5315381/ /pubmed/28224058 http://dx.doi.org/10.3732/apps.1600130 Text en © 2017 Monthe et al. Published by the Botanical Society of America https://creativecommons.org/licenses/by-nc-sa/4.0/ This is an open access article distributed under the terms of the Creative Commons Attribution License (CC-BY-NC-SA 4.0 (https://creativecommons.org/licenses/by-nc-sa/4.0/) ), which permits unrestricted noncommercial use and redistribution provided that the original author and source are credited and the new work is distributed under the same license as the original.
spellingShingle Primer Note
Monthe, Franck S.
Duminil, Jérôme
Tosso, Félicien
Migliore, Jérémy
Hardy, Olivier J.
Characterization of microsatellite markers in two exploited African trees, Entandrophragma candollei and E. utile (Meliaceae)(1)
title Characterization of microsatellite markers in two exploited African trees, Entandrophragma candollei and E. utile (Meliaceae)(1)
title_full Characterization of microsatellite markers in two exploited African trees, Entandrophragma candollei and E. utile (Meliaceae)(1)
title_fullStr Characterization of microsatellite markers in two exploited African trees, Entandrophragma candollei and E. utile (Meliaceae)(1)
title_full_unstemmed Characterization of microsatellite markers in two exploited African trees, Entandrophragma candollei and E. utile (Meliaceae)(1)
title_short Characterization of microsatellite markers in two exploited African trees, Entandrophragma candollei and E. utile (Meliaceae)(1)
title_sort characterization of microsatellite markers in two exploited african trees, entandrophragma candollei and e. utile (meliaceae)(1)
topic Primer Note
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC5315381/
https://www.ncbi.nlm.nih.gov/pubmed/28224058
http://dx.doi.org/10.3732/apps.1600130
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