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Characterization of microsatellite markers in two exploited African trees, Entandrophragma candollei and E. utile (Meliaceae)(1)
PREMISE OF THE STUDY: Multiplexes of nuclear microsatellite primers were developed to investigate population genetic structure and diversity in two exploited African rainforest trees: Entandrophragma candollei and E. utile (Meliaceae). METHODS AND RESULTS: Microsatellite isolation was performed simu...
Autores principales: | , , , , |
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Formato: | Online Artículo Texto |
Lenguaje: | English |
Publicado: |
Botanical Society of America
2017
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Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC5315381/ https://www.ncbi.nlm.nih.gov/pubmed/28224058 http://dx.doi.org/10.3732/apps.1600130 |
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author | Monthe, Franck S. Duminil, Jérôme Tosso, Félicien Migliore, Jérémy Hardy, Olivier J. |
author_facet | Monthe, Franck S. Duminil, Jérôme Tosso, Félicien Migliore, Jérémy Hardy, Olivier J. |
author_sort | Monthe, Franck S. |
collection | PubMed |
description | PREMISE OF THE STUDY: Multiplexes of nuclear microsatellite primers were developed to investigate population genetic structure and diversity in two exploited African rainforest trees: Entandrophragma candollei and E. utile (Meliaceae). METHODS AND RESULTS: Microsatellite isolation was performed simultaneously on two nonenriched genomic libraries after next-generation sequencing. We developed 16 and 22 polymorphic markers for E. candollei and E. utile in three and four multiplexes, respectively. The number of alleles ranged from two to 17 for E. candollei and from three to 19 for E. utile. Mean expected and observed heterozygosity ranged between 0.75 ± 0.13 and 0.55 ± 0.23 for E. candollei and between 0.73 ± 0.10 and 0.49 ± 0.2 for E. utile. CONCLUSIONS: These sets of nuclear microsatellite markers constitute useful tools for exploring gene flow patterns in these two Entandrophragma species. |
format | Online Article Text |
id | pubmed-5315381 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2017 |
publisher | Botanical Society of America |
record_format | MEDLINE/PubMed |
spelling | pubmed-53153812017-02-21 Characterization of microsatellite markers in two exploited African trees, Entandrophragma candollei and E. utile (Meliaceae)(1) Monthe, Franck S. Duminil, Jérôme Tosso, Félicien Migliore, Jérémy Hardy, Olivier J. Appl Plant Sci Primer Note PREMISE OF THE STUDY: Multiplexes of nuclear microsatellite primers were developed to investigate population genetic structure and diversity in two exploited African rainforest trees: Entandrophragma candollei and E. utile (Meliaceae). METHODS AND RESULTS: Microsatellite isolation was performed simultaneously on two nonenriched genomic libraries after next-generation sequencing. We developed 16 and 22 polymorphic markers for E. candollei and E. utile in three and four multiplexes, respectively. The number of alleles ranged from two to 17 for E. candollei and from three to 19 for E. utile. Mean expected and observed heterozygosity ranged between 0.75 ± 0.13 and 0.55 ± 0.23 for E. candollei and between 0.73 ± 0.10 and 0.49 ± 0.2 for E. utile. CONCLUSIONS: These sets of nuclear microsatellite markers constitute useful tools for exploring gene flow patterns in these two Entandrophragma species. Botanical Society of America 2017-02-09 /pmc/articles/PMC5315381/ /pubmed/28224058 http://dx.doi.org/10.3732/apps.1600130 Text en © 2017 Monthe et al. Published by the Botanical Society of America https://creativecommons.org/licenses/by-nc-sa/4.0/ This is an open access article distributed under the terms of the Creative Commons Attribution License (CC-BY-NC-SA 4.0 (https://creativecommons.org/licenses/by-nc-sa/4.0/) ), which permits unrestricted noncommercial use and redistribution provided that the original author and source are credited and the new work is distributed under the same license as the original. |
spellingShingle | Primer Note Monthe, Franck S. Duminil, Jérôme Tosso, Félicien Migliore, Jérémy Hardy, Olivier J. Characterization of microsatellite markers in two exploited African trees, Entandrophragma candollei and E. utile (Meliaceae)(1) |
title | Characterization of microsatellite markers in two exploited African trees, Entandrophragma candollei and E. utile (Meliaceae)(1) |
title_full | Characterization of microsatellite markers in two exploited African trees, Entandrophragma candollei and E. utile (Meliaceae)(1) |
title_fullStr | Characterization of microsatellite markers in two exploited African trees, Entandrophragma candollei and E. utile (Meliaceae)(1) |
title_full_unstemmed | Characterization of microsatellite markers in two exploited African trees, Entandrophragma candollei and E. utile (Meliaceae)(1) |
title_short | Characterization of microsatellite markers in two exploited African trees, Entandrophragma candollei and E. utile (Meliaceae)(1) |
title_sort | characterization of microsatellite markers in two exploited african trees, entandrophragma candollei and e. utile (meliaceae)(1) |
topic | Primer Note |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC5315381/ https://www.ncbi.nlm.nih.gov/pubmed/28224058 http://dx.doi.org/10.3732/apps.1600130 |
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