Metagenomic exploration of microbial community in mine tailings of Malanjkhand copper project, India

Mine tailings from copper mines are considered as one of the sources of highly hazardous acid mine drainage (AMD) due to bio-oxidation of its sulfidic constituents. This study was designed to understand microbial community composition and potential for acid generation using samples from mine tailing...

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Autores principales: Gupta, Abhishek, Dutta, Avishek, Sarkar, Jayeeta, Paul, Dhiraj, Panigrahi, Mruganka Kumar, Sar, Pinaki
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Elsevier 2017
Materias:
Data in Brief
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC5315440/
https://www.ncbi.nlm.nih.gov/pubmed/28239550
http://dx.doi.org/10.1016/j.gdata.2017.02.004
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author Gupta, Abhishek
Dutta, Avishek
Sarkar, Jayeeta
Paul, Dhiraj
Panigrahi, Mruganka Kumar
Sar, Pinaki
author_facet Gupta, Abhishek
Dutta, Avishek
Sarkar, Jayeeta
Paul, Dhiraj
Panigrahi, Mruganka Kumar
Sar, Pinaki
author_sort Gupta, Abhishek
collection PubMed
description Mine tailings from copper mines are considered as one of the sources of highly hazardous acid mine drainage (AMD) due to bio-oxidation of its sulfidic constituents. This study was designed to understand microbial community composition and potential for acid generation using samples from mine tailings of Malanjkhand copper project (MCP), India through 16S rRNA gene based amplicon sequencing approach (targeting V4 region). Three tailings samples (T1, T2 and T3) with varied physiochemical properties selected for the study revealed distinct microbial assemblages. Sample (T3) with most extreme nature (pH < 2.0) harbored Proteobacteria, Actinobacteria, Chloroflexi while the samples (T1 and T3) with slightly moderate nature (pH < 4.0 and > 3.0) exhibited abundance of Proteobacteria, Fimicutes, Actinobacteria and/or Nitrospirae. Metagenomic sequences are available under the BioProject ID PRJNA361456.
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spelling pubmed-53154402017-02-26 Metagenomic exploration of microbial community in mine tailings of Malanjkhand copper project, India Gupta, Abhishek Dutta, Avishek Sarkar, Jayeeta Paul, Dhiraj Panigrahi, Mruganka Kumar Sar, Pinaki Genom Data Data in Brief Mine tailings from copper mines are considered as one of the sources of highly hazardous acid mine drainage (AMD) due to bio-oxidation of its sulfidic constituents. This study was designed to understand microbial community composition and potential for acid generation using samples from mine tailings of Malanjkhand copper project (MCP), India through 16S rRNA gene based amplicon sequencing approach (targeting V4 region). Three tailings samples (T1, T2 and T3) with varied physiochemical properties selected for the study revealed distinct microbial assemblages. Sample (T3) with most extreme nature (pH < 2.0) harbored Proteobacteria, Actinobacteria, Chloroflexi while the samples (T1 and T3) with slightly moderate nature (pH < 4.0 and > 3.0) exhibited abundance of Proteobacteria, Fimicutes, Actinobacteria and/or Nitrospirae. Metagenomic sequences are available under the BioProject ID PRJNA361456. Elsevier 2017-02-04 /pmc/articles/PMC5315440/ /pubmed/28239550 http://dx.doi.org/10.1016/j.gdata.2017.02.004 Text en © 2017 The Authors http://creativecommons.org/licenses/by-nc-nd/4.0/ This is an open access article under the CC BY-NC-ND license (http://creativecommons.org/licenses/by-nc-nd/4.0/).
spellingShingle Data in Brief
Gupta, Abhishek
Dutta, Avishek
Sarkar, Jayeeta
Paul, Dhiraj
Panigrahi, Mruganka Kumar
Sar, Pinaki
Metagenomic exploration of microbial community in mine tailings of Malanjkhand copper project, India
title Metagenomic exploration of microbial community in mine tailings of Malanjkhand copper project, India
title_full Metagenomic exploration of microbial community in mine tailings of Malanjkhand copper project, India
title_fullStr Metagenomic exploration of microbial community in mine tailings of Malanjkhand copper project, India
title_full_unstemmed Metagenomic exploration of microbial community in mine tailings of Malanjkhand copper project, India
title_short Metagenomic exploration of microbial community in mine tailings of Malanjkhand copper project, India
title_sort metagenomic exploration of microbial community in mine tailings of malanjkhand copper project, india
topic Data in Brief
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC5315440/
https://www.ncbi.nlm.nih.gov/pubmed/28239550
http://dx.doi.org/10.1016/j.gdata.2017.02.004
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