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Expression Pattern of ERF Gene Family under Multiple Abiotic Stresses in Populus simonii × P. nigra

Identification of gene expression patterns of key genes across multiple abiotic stresses is critical for mechanistic understanding of stress resistance in plant. In the present study, we identified differentially expressed genes (DEGs) in di-haploid Populus simonii × P. nigra under respective stress...

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Autores principales: Yao, Wenjing, Zhang, Xuemei, Zhou, Boru, Zhao, Kai, Li, Renhua, Jiang, Tingbo
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Frontiers Media S.A. 2017
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC5316532/
https://www.ncbi.nlm.nih.gov/pubmed/28265277
http://dx.doi.org/10.3389/fpls.2017.00181
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author Yao, Wenjing
Zhang, Xuemei
Zhou, Boru
Zhao, Kai
Li, Renhua
Jiang, Tingbo
author_facet Yao, Wenjing
Zhang, Xuemei
Zhou, Boru
Zhao, Kai
Li, Renhua
Jiang, Tingbo
author_sort Yao, Wenjing
collection PubMed
description Identification of gene expression patterns of key genes across multiple abiotic stresses is critical for mechanistic understanding of stress resistance in plant. In the present study, we identified differentially expressed genes (DEGs) in di-haploid Populus simonii × P. nigra under respective stresses of NaCl, KCl, CdCl(2,) and PEG. On the basis of RNA-Seq, we detected 247 DEGs that are shared by the four stresses in wild type poplar, and mRNA abundance of the DEGs were validated in transgenic poplar overexpressing ERF76 gene by RNA-Seq and RT-qPCR. Results from gene ontology analysis indicated that these genes are enriched in significant pathways, such as phenylpropanoid biosynthesis, phenylalanine metabolism, starch and sucrose metabolism, and plant hormone signal transduction. Ethylene response factor (ERF) gene family plays significant role in plant abiotic stress responses. We also investigated expression pattern of ERF gene family under the four stresses. The ERFs and DEGs share similar expression pattern across the four stresses. The transgenic poplar is superior to WT in morphologic, physiological and biochemical traits, which demonstrated the ERF76 gene plays a significant role in stress resistance. These studies will give a rise in understanding the stress response mechanisms in poplar.
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spelling pubmed-53165322017-03-06 Expression Pattern of ERF Gene Family under Multiple Abiotic Stresses in Populus simonii × P. nigra Yao, Wenjing Zhang, Xuemei Zhou, Boru Zhao, Kai Li, Renhua Jiang, Tingbo Front Plant Sci Plant Science Identification of gene expression patterns of key genes across multiple abiotic stresses is critical for mechanistic understanding of stress resistance in plant. In the present study, we identified differentially expressed genes (DEGs) in di-haploid Populus simonii × P. nigra under respective stresses of NaCl, KCl, CdCl(2,) and PEG. On the basis of RNA-Seq, we detected 247 DEGs that are shared by the four stresses in wild type poplar, and mRNA abundance of the DEGs were validated in transgenic poplar overexpressing ERF76 gene by RNA-Seq and RT-qPCR. Results from gene ontology analysis indicated that these genes are enriched in significant pathways, such as phenylpropanoid biosynthesis, phenylalanine metabolism, starch and sucrose metabolism, and plant hormone signal transduction. Ethylene response factor (ERF) gene family plays significant role in plant abiotic stress responses. We also investigated expression pattern of ERF gene family under the four stresses. The ERFs and DEGs share similar expression pattern across the four stresses. The transgenic poplar is superior to WT in morphologic, physiological and biochemical traits, which demonstrated the ERF76 gene plays a significant role in stress resistance. These studies will give a rise in understanding the stress response mechanisms in poplar. Frontiers Media S.A. 2017-02-20 /pmc/articles/PMC5316532/ /pubmed/28265277 http://dx.doi.org/10.3389/fpls.2017.00181 Text en Copyright © 2017 Yao, Zhang, Zhou, Zhao, Li and Jiang. http://creativecommons.org/licenses/by/4.0/ This is an open-access article distributed under the terms of the Creative Commons Attribution License (CC BY). The use, distribution or reproduction in other forums is permitted, provided the original author(s) or licensor are credited and that the original publication in this journal is cited, in accordance with accepted academic practice. No use, distribution or reproduction is permitted which does not comply with these terms.
spellingShingle Plant Science
Yao, Wenjing
Zhang, Xuemei
Zhou, Boru
Zhao, Kai
Li, Renhua
Jiang, Tingbo
Expression Pattern of ERF Gene Family under Multiple Abiotic Stresses in Populus simonii × P. nigra
title Expression Pattern of ERF Gene Family under Multiple Abiotic Stresses in Populus simonii × P. nigra
title_full Expression Pattern of ERF Gene Family under Multiple Abiotic Stresses in Populus simonii × P. nigra
title_fullStr Expression Pattern of ERF Gene Family under Multiple Abiotic Stresses in Populus simonii × P. nigra
title_full_unstemmed Expression Pattern of ERF Gene Family under Multiple Abiotic Stresses in Populus simonii × P. nigra
title_short Expression Pattern of ERF Gene Family under Multiple Abiotic Stresses in Populus simonii × P. nigra
title_sort expression pattern of erf gene family under multiple abiotic stresses in populus simonii × p. nigra
topic Plant Science
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC5316532/
https://www.ncbi.nlm.nih.gov/pubmed/28265277
http://dx.doi.org/10.3389/fpls.2017.00181
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