Cargando…
Expression Pattern of ERF Gene Family under Multiple Abiotic Stresses in Populus simonii × P. nigra
Identification of gene expression patterns of key genes across multiple abiotic stresses is critical for mechanistic understanding of stress resistance in plant. In the present study, we identified differentially expressed genes (DEGs) in di-haploid Populus simonii × P. nigra under respective stress...
Autores principales: | , , , , , |
---|---|
Formato: | Online Artículo Texto |
Lenguaje: | English |
Publicado: |
Frontiers Media S.A.
2017
|
Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC5316532/ https://www.ncbi.nlm.nih.gov/pubmed/28265277 http://dx.doi.org/10.3389/fpls.2017.00181 |
_version_ | 1782508845192445952 |
---|---|
author | Yao, Wenjing Zhang, Xuemei Zhou, Boru Zhao, Kai Li, Renhua Jiang, Tingbo |
author_facet | Yao, Wenjing Zhang, Xuemei Zhou, Boru Zhao, Kai Li, Renhua Jiang, Tingbo |
author_sort | Yao, Wenjing |
collection | PubMed |
description | Identification of gene expression patterns of key genes across multiple abiotic stresses is critical for mechanistic understanding of stress resistance in plant. In the present study, we identified differentially expressed genes (DEGs) in di-haploid Populus simonii × P. nigra under respective stresses of NaCl, KCl, CdCl(2,) and PEG. On the basis of RNA-Seq, we detected 247 DEGs that are shared by the four stresses in wild type poplar, and mRNA abundance of the DEGs were validated in transgenic poplar overexpressing ERF76 gene by RNA-Seq and RT-qPCR. Results from gene ontology analysis indicated that these genes are enriched in significant pathways, such as phenylpropanoid biosynthesis, phenylalanine metabolism, starch and sucrose metabolism, and plant hormone signal transduction. Ethylene response factor (ERF) gene family plays significant role in plant abiotic stress responses. We also investigated expression pattern of ERF gene family under the four stresses. The ERFs and DEGs share similar expression pattern across the four stresses. The transgenic poplar is superior to WT in morphologic, physiological and biochemical traits, which demonstrated the ERF76 gene plays a significant role in stress resistance. These studies will give a rise in understanding the stress response mechanisms in poplar. |
format | Online Article Text |
id | pubmed-5316532 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2017 |
publisher | Frontiers Media S.A. |
record_format | MEDLINE/PubMed |
spelling | pubmed-53165322017-03-06 Expression Pattern of ERF Gene Family under Multiple Abiotic Stresses in Populus simonii × P. nigra Yao, Wenjing Zhang, Xuemei Zhou, Boru Zhao, Kai Li, Renhua Jiang, Tingbo Front Plant Sci Plant Science Identification of gene expression patterns of key genes across multiple abiotic stresses is critical for mechanistic understanding of stress resistance in plant. In the present study, we identified differentially expressed genes (DEGs) in di-haploid Populus simonii × P. nigra under respective stresses of NaCl, KCl, CdCl(2,) and PEG. On the basis of RNA-Seq, we detected 247 DEGs that are shared by the four stresses in wild type poplar, and mRNA abundance of the DEGs were validated in transgenic poplar overexpressing ERF76 gene by RNA-Seq and RT-qPCR. Results from gene ontology analysis indicated that these genes are enriched in significant pathways, such as phenylpropanoid biosynthesis, phenylalanine metabolism, starch and sucrose metabolism, and plant hormone signal transduction. Ethylene response factor (ERF) gene family plays significant role in plant abiotic stress responses. We also investigated expression pattern of ERF gene family under the four stresses. The ERFs and DEGs share similar expression pattern across the four stresses. The transgenic poplar is superior to WT in morphologic, physiological and biochemical traits, which demonstrated the ERF76 gene plays a significant role in stress resistance. These studies will give a rise in understanding the stress response mechanisms in poplar. Frontiers Media S.A. 2017-02-20 /pmc/articles/PMC5316532/ /pubmed/28265277 http://dx.doi.org/10.3389/fpls.2017.00181 Text en Copyright © 2017 Yao, Zhang, Zhou, Zhao, Li and Jiang. http://creativecommons.org/licenses/by/4.0/ This is an open-access article distributed under the terms of the Creative Commons Attribution License (CC BY). The use, distribution or reproduction in other forums is permitted, provided the original author(s) or licensor are credited and that the original publication in this journal is cited, in accordance with accepted academic practice. No use, distribution or reproduction is permitted which does not comply with these terms. |
spellingShingle | Plant Science Yao, Wenjing Zhang, Xuemei Zhou, Boru Zhao, Kai Li, Renhua Jiang, Tingbo Expression Pattern of ERF Gene Family under Multiple Abiotic Stresses in Populus simonii × P. nigra |
title | Expression Pattern of ERF Gene Family under Multiple Abiotic Stresses in Populus simonii × P. nigra |
title_full | Expression Pattern of ERF Gene Family under Multiple Abiotic Stresses in Populus simonii × P. nigra |
title_fullStr | Expression Pattern of ERF Gene Family under Multiple Abiotic Stresses in Populus simonii × P. nigra |
title_full_unstemmed | Expression Pattern of ERF Gene Family under Multiple Abiotic Stresses in Populus simonii × P. nigra |
title_short | Expression Pattern of ERF Gene Family under Multiple Abiotic Stresses in Populus simonii × P. nigra |
title_sort | expression pattern of erf gene family under multiple abiotic stresses in populus simonii × p. nigra |
topic | Plant Science |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC5316532/ https://www.ncbi.nlm.nih.gov/pubmed/28265277 http://dx.doi.org/10.3389/fpls.2017.00181 |
work_keys_str_mv | AT yaowenjing expressionpatternoferfgenefamilyundermultipleabioticstressesinpopulussimoniipnigra AT zhangxuemei expressionpatternoferfgenefamilyundermultipleabioticstressesinpopulussimoniipnigra AT zhouboru expressionpatternoferfgenefamilyundermultipleabioticstressesinpopulussimoniipnigra AT zhaokai expressionpatternoferfgenefamilyundermultipleabioticstressesinpopulussimoniipnigra AT lirenhua expressionpatternoferfgenefamilyundermultipleabioticstressesinpopulussimoniipnigra AT jiangtingbo expressionpatternoferfgenefamilyundermultipleabioticstressesinpopulussimoniipnigra |