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Advances of Community-Level Plant DNA Barcoding in China

DNA barcoding is a commonly used bio-technology in multiple disciplines including biology, environmental science, forensics and inspection, etc. Forest dynamic plots provide a unique opportunity to carry out large-scale, comparative, and multidisciplinary research for plant DNA barcoding. The paper...

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Detalles Bibliográficos
Autores principales: Pei, Nancai, Chen, Bufeng, Kress, W. J.
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Frontiers Media S.A. 2017
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC5318406/
https://www.ncbi.nlm.nih.gov/pubmed/28270824
http://dx.doi.org/10.3389/fpls.2017.00225
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author Pei, Nancai
Chen, Bufeng
Kress, W. J.
author_facet Pei, Nancai
Chen, Bufeng
Kress, W. J.
author_sort Pei, Nancai
collection PubMed
description DNA barcoding is a commonly used bio-technology in multiple disciplines including biology, environmental science, forensics and inspection, etc. Forest dynamic plots provide a unique opportunity to carry out large-scale, comparative, and multidisciplinary research for plant DNA barcoding. The paper concisely reviewed four previous progresses in China; specifically, species discrimination, community phylogenetic reconstruction, phylogenetic community structure exploration, and biodiversity index evaluation. Further, we demonstrated three major challenges; specifically, building the impetus to generate DNA barcodes using multiple plant DNA markers for all woody species at forest community levels, analyzing massive DNA barcoding sequence data, and promoting theoretical innovation. Lastly, we raised five possible directions; specifically, proposing a “purpose-driven barcode” fit for multi-level applications, developing new integrative sequencing strategies, pushing DNA barcoding beyond terrestrial ecosystem, constructing national-level DNA barcode sequence libraries for special plant groups, and establishing intelligent identification systems or online server platforms. These efforts will be potentially valuable to explore large-scale biodiversity patterns, the origin and evolution of life, and will also facilitate preservation and utilization of biodiversity resources.
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spelling pubmed-53184062017-03-07 Advances of Community-Level Plant DNA Barcoding in China Pei, Nancai Chen, Bufeng Kress, W. J. Front Plant Sci Plant Science DNA barcoding is a commonly used bio-technology in multiple disciplines including biology, environmental science, forensics and inspection, etc. Forest dynamic plots provide a unique opportunity to carry out large-scale, comparative, and multidisciplinary research for plant DNA barcoding. The paper concisely reviewed four previous progresses in China; specifically, species discrimination, community phylogenetic reconstruction, phylogenetic community structure exploration, and biodiversity index evaluation. Further, we demonstrated three major challenges; specifically, building the impetus to generate DNA barcodes using multiple plant DNA markers for all woody species at forest community levels, analyzing massive DNA barcoding sequence data, and promoting theoretical innovation. Lastly, we raised five possible directions; specifically, proposing a “purpose-driven barcode” fit for multi-level applications, developing new integrative sequencing strategies, pushing DNA barcoding beyond terrestrial ecosystem, constructing national-level DNA barcode sequence libraries for special plant groups, and establishing intelligent identification systems or online server platforms. These efforts will be potentially valuable to explore large-scale biodiversity patterns, the origin and evolution of life, and will also facilitate preservation and utilization of biodiversity resources. Frontiers Media S.A. 2017-02-21 /pmc/articles/PMC5318406/ /pubmed/28270824 http://dx.doi.org/10.3389/fpls.2017.00225 Text en Copyright © 2017 Pei, Chen and Kress. http://creativecommons.org/licenses/by/4.0/ This is an open-access article distributed under the terms of the Creative Commons Attribution License (CC BY). The use, distribution or reproduction in other forums is permitted, provided the original author(s) or licensor are credited and that the original publication in this journal is cited, in accordance with accepted academic practice. No use, distribution or reproduction is permitted which does not comply with these terms.
spellingShingle Plant Science
Pei, Nancai
Chen, Bufeng
Kress, W. J.
Advances of Community-Level Plant DNA Barcoding in China
title Advances of Community-Level Plant DNA Barcoding in China
title_full Advances of Community-Level Plant DNA Barcoding in China
title_fullStr Advances of Community-Level Plant DNA Barcoding in China
title_full_unstemmed Advances of Community-Level Plant DNA Barcoding in China
title_short Advances of Community-Level Plant DNA Barcoding in China
title_sort advances of community-level plant dna barcoding in china
topic Plant Science
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC5318406/
https://www.ncbi.nlm.nih.gov/pubmed/28270824
http://dx.doi.org/10.3389/fpls.2017.00225
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