SNP-sites: rapid efficient extraction of SNPs from multi-FASTA alignments

Rapidly decreasing genome sequencing costs have led to a proportionate increase in the number of samples used in prokaryotic population studies. Extracting single nucleotide polymorphisms (SNPs) from a large whole genome alignment is now a routine task, but existing tools have failed to scale effici...

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Detalles Bibliográficos
Autores principales: Page, Andrew J., Taylor, Ben, Delaney, Aidan J., Soares, Jorge, Seemann, Torsten, Keane, Jacqueline A., Harris, Simon R.
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Microbiology Society 2016
Materias:
Methods Paper
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC5320690/
https://www.ncbi.nlm.nih.gov/pubmed/28348851
http://dx.doi.org/10.1099/mgen.0.000056

Internet

https://www.ncbi.nlm.nih.gov/pmc/articles/PMC5320690/
https://www.ncbi.nlm.nih.gov/pubmed/28348851
http://dx.doi.org/10.1099/mgen.0.000056

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