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Identification and Preliminary Validation of Radiation Response Protein(s) in Human Blood for a High-throughput Molecular Biodosimetry Technology for the Future

The absence of a rapid and high-throughput technology for radiation biodosimetry has been a great obstacle in our full preparedness to cope with large-scale radiological incidents. The existing cytogenetic technologies have limitations, primarily due to their time-consuming methodologies, which incl...

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Autores principales: Nongrum, Saibadaiahun, Vaiphei, S. Thangminlal, Keppen, Joshua, Ksoo, Mandahakani, Kashyap, Ettrika, Sharan, Rajesh N.
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Medknow Publications & Media Pvt Ltd 2017
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC5320788/
https://www.ncbi.nlm.nih.gov/pubmed/28250912
http://dx.doi.org/10.4103/2041-9414.198910
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author Nongrum, Saibadaiahun
Vaiphei, S. Thangminlal
Keppen, Joshua
Ksoo, Mandahakani
Kashyap, Ettrika
Sharan, Rajesh N.
author_facet Nongrum, Saibadaiahun
Vaiphei, S. Thangminlal
Keppen, Joshua
Ksoo, Mandahakani
Kashyap, Ettrika
Sharan, Rajesh N.
author_sort Nongrum, Saibadaiahun
collection PubMed
description The absence of a rapid and high-throughput technology for radiation biodosimetry has been a great obstacle in our full preparedness to cope with large-scale radiological incidents. The existing cytogenetic technologies have limitations, primarily due to their time-consuming methodologies, which include a tissue culture step, and the time required for scoring. This has seriously undermined its application in a mass casualty scenario under radiological emergencies for timely triage and medical interventions. Recent advances in genomics and proteomics in the postgenomic era have opened up new platforms and avenues to discover molecular biomarkers for biodosimetry in the future. Using a genomic-to-proteomic approach, we have identified a basket of twenty “candidate” radiation response genes (RRGs) using DNA microarray and tools of bioinformatics immediately after ex vivo irradiation of freshly drawn whole blood of consenting and healthy human volunteers. The candidate RRGs have partially been validated using real-time quantitative polymerase chain reaction (RT-qPCR or qPCR) to identify potential “candidate” RRGs at mRNA level. Two potential RRGs, CDNK1A and ZNF440, have so far been identified as genes with potentials to form radiation response proteins in liquid biopsy of blood, which shall eventually form the basis of fluorescence- or ELISA-based quantitative immunoprobe assay for a high-throughput technology of molecular biodosimetry in the future. More work is continuing.
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spelling pubmed-53207882017-03-01 Identification and Preliminary Validation of Radiation Response Protein(s) in Human Blood for a High-throughput Molecular Biodosimetry Technology for the Future Nongrum, Saibadaiahun Vaiphei, S. Thangminlal Keppen, Joshua Ksoo, Mandahakani Kashyap, Ettrika Sharan, Rajesh N. Genome Integr Original Article The absence of a rapid and high-throughput technology for radiation biodosimetry has been a great obstacle in our full preparedness to cope with large-scale radiological incidents. The existing cytogenetic technologies have limitations, primarily due to their time-consuming methodologies, which include a tissue culture step, and the time required for scoring. This has seriously undermined its application in a mass casualty scenario under radiological emergencies for timely triage and medical interventions. Recent advances in genomics and proteomics in the postgenomic era have opened up new platforms and avenues to discover molecular biomarkers for biodosimetry in the future. Using a genomic-to-proteomic approach, we have identified a basket of twenty “candidate” radiation response genes (RRGs) using DNA microarray and tools of bioinformatics immediately after ex vivo irradiation of freshly drawn whole blood of consenting and healthy human volunteers. The candidate RRGs have partially been validated using real-time quantitative polymerase chain reaction (RT-qPCR or qPCR) to identify potential “candidate” RRGs at mRNA level. Two potential RRGs, CDNK1A and ZNF440, have so far been identified as genes with potentials to form radiation response proteins in liquid biopsy of blood, which shall eventually form the basis of fluorescence- or ELISA-based quantitative immunoprobe assay for a high-throughput technology of molecular biodosimetry in the future. More work is continuing. Medknow Publications & Media Pvt Ltd 2017-01-23 /pmc/articles/PMC5320788/ /pubmed/28250912 http://dx.doi.org/10.4103/2041-9414.198910 Text en Copyright: © 2017 Genome Integrity http://creativecommons.org/licenses/by-nc-sa/3.0 This is an open access article distributed under the terms of the Creative Commons Attribution-NonCommercial-ShareAlike 3.0 License, which allows others to remix, tweak, and build upon the work non-commercially, as long as the author is credited and the new creations are licensed under the identical terms.
spellingShingle Original Article
Nongrum, Saibadaiahun
Vaiphei, S. Thangminlal
Keppen, Joshua
Ksoo, Mandahakani
Kashyap, Ettrika
Sharan, Rajesh N.
Identification and Preliminary Validation of Radiation Response Protein(s) in Human Blood for a High-throughput Molecular Biodosimetry Technology for the Future
title Identification and Preliminary Validation of Radiation Response Protein(s) in Human Blood for a High-throughput Molecular Biodosimetry Technology for the Future
title_full Identification and Preliminary Validation of Radiation Response Protein(s) in Human Blood for a High-throughput Molecular Biodosimetry Technology for the Future
title_fullStr Identification and Preliminary Validation of Radiation Response Protein(s) in Human Blood for a High-throughput Molecular Biodosimetry Technology for the Future
title_full_unstemmed Identification and Preliminary Validation of Radiation Response Protein(s) in Human Blood for a High-throughput Molecular Biodosimetry Technology for the Future
title_short Identification and Preliminary Validation of Radiation Response Protein(s) in Human Blood for a High-throughput Molecular Biodosimetry Technology for the Future
title_sort identification and preliminary validation of radiation response protein(s) in human blood for a high-throughput molecular biodosimetry technology for the future
topic Original Article
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC5320788/
https://www.ncbi.nlm.nih.gov/pubmed/28250912
http://dx.doi.org/10.4103/2041-9414.198910
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