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Microarray Integrated Analysis of a Gene Network for the CD36 Myocardial Phenotype
CD36 is a multifunctional membrane-type receptor glycoprotein that reacts with oxidized low-density lipoprotein and long-chain fatty acid (LCFA). However, much remains to be understood about the molecular mechanism of the cardio-myopathy observed in CD36-KO mice. In this study, we identify different...
Autores principales: | , , , |
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Formato: | Online Artículo Texto |
Lenguaje: | English |
Publicado: |
Biomedical Informatics
2016
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Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC5320929/ https://www.ncbi.nlm.nih.gov/pubmed/28293076 http://dx.doi.org/10.6026/97320630012332 |
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author | Sabaouni, Imane Vannier, Brigitte Moussa, Ahmed Ibrahimi, Azeddine |
author_facet | Sabaouni, Imane Vannier, Brigitte Moussa, Ahmed Ibrahimi, Azeddine |
author_sort | Sabaouni, Imane |
collection | PubMed |
description | CD36 is a multifunctional membrane-type receptor glycoprotein that reacts with oxidized low-density lipoprotein and long-chain fatty acid (LCFA). However, much remains to be understood about the molecular mechanism of the cardio-myopathy observed in CD36-KO mice. In this study, we identify different genes pathways involved in response to CD36 cardio-myopathy phenotype by identifying the differences among biological processes, molecular pathways and networks of interactions that emerge from knocking CD3 and using different bioinformatics tools such as STRING, GeneMANIA and Cytoscape. We were able list all the CD36-regulated genes, their related function and their specific networks. Data analysis showed that CD36-regulated genes differentially expressed are involved in biological processes such as FA metabolism, angiogenesis/apoptosis and cell structure. These results provide the first look at mechanisms involved in CD36 deficiency and development of cardio-myopathy and the opportunity to identify new therapeutic targets. |
format | Online Article Text |
id | pubmed-5320929 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2016 |
publisher | Biomedical Informatics |
record_format | MEDLINE/PubMed |
spelling | pubmed-53209292017-03-14 Microarray Integrated Analysis of a Gene Network for the CD36 Myocardial Phenotype Sabaouni, Imane Vannier, Brigitte Moussa, Ahmed Ibrahimi, Azeddine Bioinformation Hypothesis CD36 is a multifunctional membrane-type receptor glycoprotein that reacts with oxidized low-density lipoprotein and long-chain fatty acid (LCFA). However, much remains to be understood about the molecular mechanism of the cardio-myopathy observed in CD36-KO mice. In this study, we identify different genes pathways involved in response to CD36 cardio-myopathy phenotype by identifying the differences among biological processes, molecular pathways and networks of interactions that emerge from knocking CD3 and using different bioinformatics tools such as STRING, GeneMANIA and Cytoscape. We were able list all the CD36-regulated genes, their related function and their specific networks. Data analysis showed that CD36-regulated genes differentially expressed are involved in biological processes such as FA metabolism, angiogenesis/apoptosis and cell structure. These results provide the first look at mechanisms involved in CD36 deficiency and development of cardio-myopathy and the opportunity to identify new therapeutic targets. Biomedical Informatics 2016-10-11 /pmc/articles/PMC5320929/ /pubmed/28293076 http://dx.doi.org/10.6026/97320630012332 Text en © 2016 Biomedical Informatics This is an Open Access article which permits unrestricted use, distribution, and reproduction in any medium, provided the original work is properly credited. This is distributed under the terms of the Creative Commons Attribution License. |
spellingShingle | Hypothesis Sabaouni, Imane Vannier, Brigitte Moussa, Ahmed Ibrahimi, Azeddine Microarray Integrated Analysis of a Gene Network for the CD36 Myocardial Phenotype |
title | Microarray Integrated Analysis of a Gene Network for the CD36 Myocardial Phenotype |
title_full | Microarray Integrated Analysis of a Gene Network for the CD36 Myocardial Phenotype |
title_fullStr | Microarray Integrated Analysis of a Gene Network for the CD36 Myocardial Phenotype |
title_full_unstemmed | Microarray Integrated Analysis of a Gene Network for the CD36 Myocardial Phenotype |
title_short | Microarray Integrated Analysis of a Gene Network for the CD36 Myocardial Phenotype |
title_sort | microarray integrated analysis of a gene network for the cd36 myocardial phenotype |
topic | Hypothesis |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC5320929/ https://www.ncbi.nlm.nih.gov/pubmed/28293076 http://dx.doi.org/10.6026/97320630012332 |
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