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High-Throughput and Computational Study of Leaf Senescence through a Phenomic Approach
Leaf senescence is influenced by its life history, comprising a series of developmental and physiological experiences. Exploration of the biological principles underlying leaf lifespan and senescence requires a schema to trace leaf phenotypes, based on the interaction of genetic and environmental fa...
Autores principales: | , , , , , , |
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Formato: | Online Artículo Texto |
Lenguaje: | English |
Publicado: |
Frontiers Media S.A.
2017
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Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC5322180/ https://www.ncbi.nlm.nih.gov/pubmed/28280501 http://dx.doi.org/10.3389/fpls.2017.00250 |
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author | Lyu, Jae IL Baek, Seung Hee Jung, Sukjoon Chu, Hyosub Nam, Hong Gil Kim, Jeongsik Lim, Pyung Ok |
author_facet | Lyu, Jae IL Baek, Seung Hee Jung, Sukjoon Chu, Hyosub Nam, Hong Gil Kim, Jeongsik Lim, Pyung Ok |
author_sort | Lyu, Jae IL |
collection | PubMed |
description | Leaf senescence is influenced by its life history, comprising a series of developmental and physiological experiences. Exploration of the biological principles underlying leaf lifespan and senescence requires a schema to trace leaf phenotypes, based on the interaction of genetic and environmental factors. We developed a new approach and concept that will facilitate systemic biological understanding of leaf lifespan and senescence, utilizing the phenome high-throughput investigator (PHI) with a single-leaf-basis phenotyping platform. Our pilot tests showed empirical evidence for the feasibility of PHI for quantitative measurement of leaf senescence responses and improved performance in order to dissect the progression of senescence triggered by different senescence-inducing factors as well as genetic mutations. Such an establishment enables new perspectives to be proposed, which will be challenged for enhancing our fundamental understanding on the complex process of leaf senescence. We further envision that integration of phenomic data with other multi-omics data obtained from transcriptomic, proteomic, and metabolic studies will enable us to address the underlying principles of senescence, passing through different layers of information from molecule to organism. |
format | Online Article Text |
id | pubmed-5322180 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2017 |
publisher | Frontiers Media S.A. |
record_format | MEDLINE/PubMed |
spelling | pubmed-53221802017-03-09 High-Throughput and Computational Study of Leaf Senescence through a Phenomic Approach Lyu, Jae IL Baek, Seung Hee Jung, Sukjoon Chu, Hyosub Nam, Hong Gil Kim, Jeongsik Lim, Pyung Ok Front Plant Sci Plant Science Leaf senescence is influenced by its life history, comprising a series of developmental and physiological experiences. Exploration of the biological principles underlying leaf lifespan and senescence requires a schema to trace leaf phenotypes, based on the interaction of genetic and environmental factors. We developed a new approach and concept that will facilitate systemic biological understanding of leaf lifespan and senescence, utilizing the phenome high-throughput investigator (PHI) with a single-leaf-basis phenotyping platform. Our pilot tests showed empirical evidence for the feasibility of PHI for quantitative measurement of leaf senescence responses and improved performance in order to dissect the progression of senescence triggered by different senescence-inducing factors as well as genetic mutations. Such an establishment enables new perspectives to be proposed, which will be challenged for enhancing our fundamental understanding on the complex process of leaf senescence. We further envision that integration of phenomic data with other multi-omics data obtained from transcriptomic, proteomic, and metabolic studies will enable us to address the underlying principles of senescence, passing through different layers of information from molecule to organism. Frontiers Media S.A. 2017-02-23 /pmc/articles/PMC5322180/ /pubmed/28280501 http://dx.doi.org/10.3389/fpls.2017.00250 Text en Copyright © 2017 Lyu, Baek, Jung, Chu, Nam, Kim and Lim. http://creativecommons.org/licenses/by/4.0/ This is an open-access article distributed under the terms of the Creative Commons Attribution License (CC BY). The use, distribution or reproduction in other forums is permitted, provided the original author(s) or licensor are credited and that the original publication in this journal is cited, in accordance with accepted academic practice. No use, distribution or reproduction is permitted which does not comply with these terms. |
spellingShingle | Plant Science Lyu, Jae IL Baek, Seung Hee Jung, Sukjoon Chu, Hyosub Nam, Hong Gil Kim, Jeongsik Lim, Pyung Ok High-Throughput and Computational Study of Leaf Senescence through a Phenomic Approach |
title | High-Throughput and Computational Study of Leaf Senescence through a Phenomic Approach |
title_full | High-Throughput and Computational Study of Leaf Senescence through a Phenomic Approach |
title_fullStr | High-Throughput and Computational Study of Leaf Senescence through a Phenomic Approach |
title_full_unstemmed | High-Throughput and Computational Study of Leaf Senescence through a Phenomic Approach |
title_short | High-Throughput and Computational Study of Leaf Senescence through a Phenomic Approach |
title_sort | high-throughput and computational study of leaf senescence through a phenomic approach |
topic | Plant Science |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC5322180/ https://www.ncbi.nlm.nih.gov/pubmed/28280501 http://dx.doi.org/10.3389/fpls.2017.00250 |
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