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High-Throughput and Computational Study of Leaf Senescence through a Phenomic Approach

Leaf senescence is influenced by its life history, comprising a series of developmental and physiological experiences. Exploration of the biological principles underlying leaf lifespan and senescence requires a schema to trace leaf phenotypes, based on the interaction of genetic and environmental fa...

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Autores principales: Lyu, Jae IL, Baek, Seung Hee, Jung, Sukjoon, Chu, Hyosub, Nam, Hong Gil, Kim, Jeongsik, Lim, Pyung Ok
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Frontiers Media S.A. 2017
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC5322180/
https://www.ncbi.nlm.nih.gov/pubmed/28280501
http://dx.doi.org/10.3389/fpls.2017.00250
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author Lyu, Jae IL
Baek, Seung Hee
Jung, Sukjoon
Chu, Hyosub
Nam, Hong Gil
Kim, Jeongsik
Lim, Pyung Ok
author_facet Lyu, Jae IL
Baek, Seung Hee
Jung, Sukjoon
Chu, Hyosub
Nam, Hong Gil
Kim, Jeongsik
Lim, Pyung Ok
author_sort Lyu, Jae IL
collection PubMed
description Leaf senescence is influenced by its life history, comprising a series of developmental and physiological experiences. Exploration of the biological principles underlying leaf lifespan and senescence requires a schema to trace leaf phenotypes, based on the interaction of genetic and environmental factors. We developed a new approach and concept that will facilitate systemic biological understanding of leaf lifespan and senescence, utilizing the phenome high-throughput investigator (PHI) with a single-leaf-basis phenotyping platform. Our pilot tests showed empirical evidence for the feasibility of PHI for quantitative measurement of leaf senescence responses and improved performance in order to dissect the progression of senescence triggered by different senescence-inducing factors as well as genetic mutations. Such an establishment enables new perspectives to be proposed, which will be challenged for enhancing our fundamental understanding on the complex process of leaf senescence. We further envision that integration of phenomic data with other multi-omics data obtained from transcriptomic, proteomic, and metabolic studies will enable us to address the underlying principles of senescence, passing through different layers of information from molecule to organism.
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spelling pubmed-53221802017-03-09 High-Throughput and Computational Study of Leaf Senescence through a Phenomic Approach Lyu, Jae IL Baek, Seung Hee Jung, Sukjoon Chu, Hyosub Nam, Hong Gil Kim, Jeongsik Lim, Pyung Ok Front Plant Sci Plant Science Leaf senescence is influenced by its life history, comprising a series of developmental and physiological experiences. Exploration of the biological principles underlying leaf lifespan and senescence requires a schema to trace leaf phenotypes, based on the interaction of genetic and environmental factors. We developed a new approach and concept that will facilitate systemic biological understanding of leaf lifespan and senescence, utilizing the phenome high-throughput investigator (PHI) with a single-leaf-basis phenotyping platform. Our pilot tests showed empirical evidence for the feasibility of PHI for quantitative measurement of leaf senescence responses and improved performance in order to dissect the progression of senescence triggered by different senescence-inducing factors as well as genetic mutations. Such an establishment enables new perspectives to be proposed, which will be challenged for enhancing our fundamental understanding on the complex process of leaf senescence. We further envision that integration of phenomic data with other multi-omics data obtained from transcriptomic, proteomic, and metabolic studies will enable us to address the underlying principles of senescence, passing through different layers of information from molecule to organism. Frontiers Media S.A. 2017-02-23 /pmc/articles/PMC5322180/ /pubmed/28280501 http://dx.doi.org/10.3389/fpls.2017.00250 Text en Copyright © 2017 Lyu, Baek, Jung, Chu, Nam, Kim and Lim. http://creativecommons.org/licenses/by/4.0/ This is an open-access article distributed under the terms of the Creative Commons Attribution License (CC BY). The use, distribution or reproduction in other forums is permitted, provided the original author(s) or licensor are credited and that the original publication in this journal is cited, in accordance with accepted academic practice. No use, distribution or reproduction is permitted which does not comply with these terms.
spellingShingle Plant Science
Lyu, Jae IL
Baek, Seung Hee
Jung, Sukjoon
Chu, Hyosub
Nam, Hong Gil
Kim, Jeongsik
Lim, Pyung Ok
High-Throughput and Computational Study of Leaf Senescence through a Phenomic Approach
title High-Throughput and Computational Study of Leaf Senescence through a Phenomic Approach
title_full High-Throughput and Computational Study of Leaf Senescence through a Phenomic Approach
title_fullStr High-Throughput and Computational Study of Leaf Senescence through a Phenomic Approach
title_full_unstemmed High-Throughput and Computational Study of Leaf Senescence through a Phenomic Approach
title_short High-Throughput and Computational Study of Leaf Senescence through a Phenomic Approach
title_sort high-throughput and computational study of leaf senescence through a phenomic approach
topic Plant Science
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC5322180/
https://www.ncbi.nlm.nih.gov/pubmed/28280501
http://dx.doi.org/10.3389/fpls.2017.00250
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