Cargando…

Phylogenomics of Phrynosomatid Lizards: Conflicting Signals from Sequence Capture versus Restriction Site Associated DNA Sequencing

Sequence capture and restriction site associated DNA sequencing (RADseq) are popular methods for obtaining large numbers of loci for phylogenetic analysis. These methods are typically used to collect data at different evolutionary timescales; sequence capture is primarily used for obtaining conserve...

Descripción completa

Detalles Bibliográficos
Autores principales:	Leaché, Adam D., Chavez, Andreas S., Jones, Leonard N., Grummer, Jared A., Gottscho, Andrew D., Linkem, Charles W.
Formato:	Online Artículo Texto
Lenguaje:	English
Publicado:	Oxford University Press 2015
Materias:	Research Article
Acceso en línea:	https://www.ncbi.nlm.nih.gov/pmc/articles/PMC5322549/ https://www.ncbi.nlm.nih.gov/pubmed/25663487 http://dx.doi.org/10.1093/gbe/evv026

Ejemplares similares

Phylogenomic analysis of the Chilean clade of Liolaemus lizards (Squamata: Liolaemidae) based on sequence capture data
por: Panzera, Alejandra, et al.
Publicado: (2017)

Exceptional parallelisms characterize the evolutionary transition to live birth in phrynosomatid lizards
por: Domínguez-Guerrero, Saúl F., et al.
Publicado: (2022)

Phylogenomics of a rapid radiation: is chromosomal evolution linked to increased diversification in north american spiny lizards (Genus Sceloporus)?
por: Leaché, Adam D., et al.
Publicado: (2016)

Comparative Species Divergence across Eight Triplets of Spiny Lizards (Sceloporus) Using Genomic Sequence Data
por: Leaché, Adam D., et al.
Publicado: (2013)

Phylogenomic Resolution of the Cetacean Tree of Life Using Target Sequence Capture
por: McGowen, Michael R, et al.
Publicado: (2020)

A Guide to Carrying Out a Phylogenomic Target Sequence Capture Project
por: Andermann, Tobias, et al.
Publicado: (2020)

Multi-Locus Estimates of Population Structure and Migration in a Fence Lizard Hybrid Zone
por: Leaché, Adam D.
Publicado: (2011)

Speciation, population structure, and demographic history of the Mojave Fringe-toed Lizard (Uma scoparia), a species of conservation concern
por: Gottscho, Andrew D, et al.
Publicado: (2014)

Phase Resolution of Heterozygous Sites in Diploid Genomes is Important to Phylogenomic Analysis under the Multispecies Coalescent Model
por: Huang, Jun, et al.
Publicado: (2021)

Phylogenomics and Diversification of the Schistosomatidae Based on Targeted Sequence Capture of Ultra-Conserved Elements
por: Ebbs, Erika T., et al.
Publicado: (2022)

Integrating Sequence Capture and Restriction Site-Associated DNA Sequencing to Resolve Recent Radiations of Pelagic Seabirds
por: Ferrer Obiol, Joan, et al.
Publicado: (2021)

A New Approach Using Targeted Sequence Capture for Phylogenomic Studies across Cactaceae
por: Acha, Serena, et al.
Publicado: (2022)

A bioinformatic platform to integrate target capture and whole genome sequences of various read depths for phylogenomics
por: G. Ribeiro, Pedro, et al.
Publicado: (2021)

Comparison of taxon‐specific versus general locus sets for targeted sequence capture in plant phylogenomics
por: Chau, John H., et al.
Publicado: (2018)

Strategies for reducing per‐sample costs in target capture sequencing for phylogenomics and population genomics in plants
por: Hale, Haley, et al.
Publicado: (2020)

Characterization of a pericentric inversion in plateau fence lizards (Sceloporus tristichus): evidence from chromosome-scale genomes
por: Bedoya, Ana M, et al.
Publicado: (2021)

A stable phylogenomic classification of Travunioidea (Arachnida, Opiliones, Laniatores) based on sequence capture of ultraconserved elements
por: Derkarabetian, Shahan, et al.
Publicado: (2018)

Phylogenomics and sequence-structure-function relationships in the GmrSD family of Type IV restriction enzymes
por: Machnicka, Magdalena A., et al.
Publicado: (2015)

Genomic Sequencing and Phylogenomics of Cowpox Virus
por: Diaz-Cánova, Diana, et al.
Publicado: (2022)

The Eurasian invasion: phylogenomic data reveal multiple Southeast Asian origins for Indian Dragon Lizards
por: Grismer, Jesse L., et al.
Publicado: (2016)

Functional and Environmental Constraints on Prey Capture Speed in a Lizard
por: Adams, D R, et al.
Publicado: (2020)

Metagenome Sequencing to Explore Phylogenomics of Terrestrial Cyanobacteria
por: Ward, Ryan D., et al.
Publicado: (2021)

Investigating Sources of Conflict in Deep Phylogenomics of Vetigastropod Snails
por: Cunha, Tauana Junqueira, et al.
Publicado: (2021)

Population expansion, divergence, and persistence in Western Fence Lizards (Sceloporus occidentalis) at the northern extreme of their distributional range
por: Davis, Hayden R., et al.
Publicado: (2022)

Honest signals and sexual conflict: Female lizards carry undesirable indicators of quality
por: Assis, Braulio A., et al.
Publicado: (2021)

Transcriptome sequencing and phylogenomic resolution within Spalacidae (Rodentia)
por: Lin, Gong-Hua, et al.
Publicado: (2014)

Phylogenetic Analyses of Novel Squamate Adenovirus Sequences in Wild-Caught Anolis Lizards
por: Ascher, Jill M., et al.
Publicado: (2013)

Organelle Phylogenomics and Extensive Conflicting Phylogenetic Signals in the Monocot Order Poales
por: Wu, Hong, et al.
Publicado: (2022)

Transcriptome sequencing reveals signatures of positive selection in the Spot-Tailed Earless Lizard
por: Maldonado, Jose A., et al.
Publicado: (2020)

Gene markers for exon capture and phylogenomics in ray‐finned fishes
por: Jiang, Jiamei, et al.
Publicado: (2019)

Phylogenomic Relationships and Evolution of Polyploid Salix Species Revealed by RAD Sequencing Data
por: Wagner, Natascha D., et al.
Publicado: (2020)

Phylogenomics supports microsporidia as the earliest diverging clade of sequenced fungi
por: Capella-Gutiérrez, Salvador, et al.
Publicado: (2012)

PhylteR: Efficient Identification of Outlier Sequences in Phylogenomic Datasets
por: Comte, Aurore, et al.
Publicado: (2023)

Amplification and sequencing of entire tick mitochondrial genomes for a phylogenomic analysis
por: Kneubehl, Alexander R., et al.
Publicado: (2022)

Genome Sequence of Devriesea agamarum, Isolated from Agamid Lizards with Dermatitis
por: Haesendonck, Roel, et al.
Publicado: (2015)

Preliminary Information of Iranian Lizard Leishmania Promastigote Transcriptome Sequencing by Next Generation Sequencing (NGS) Method
por: Ehya, Farveh, et al.
Publicado: (2023)

Frequent occurrence of recognition Site-like sequences in the restriction endonucleases
por: Biro, Jan C, et al.
Publicado: (2004)

CisSERS: Customizable In Silico Sequence Evaluation for Restriction Sites
por: Sharpe, Richard M., et al.
Publicado: (2016)

Exploration of Plastid Phylogenomic Conflict Yields New Insights into the Deep Relationships of Leguminosae
por: Zhang, Rong, et al.
Publicado: (2020)

Untying the Gordian knot of plastid phylogenomic conflict: A case from ferns
por: Wang, Ting, et al.
Publicado: (2022)

Cannot write session to /tmp/vufind_sessions/sess_7dt4rnlm54fgr5nd5ip02jbd04