Cargando…

NFP: An R Package for Characterizing and Comparing of Annotated Biological Networks

Large amounts of various biological networks exist for representing different types of interaction data, such as genetic, metabolic, gene regulatory, and protein-protein relationships. Recent approaches on biological network study are based on different mathematical concepts. It is necessary to cons...

Descripción completa

Detalles Bibliográficos
Autores principales:	Cao, Yang, Xu, Wenjian, Niu, Chao, Bo, Xiaochen, Li, Fei
Formato:	Online Artículo Texto
Lenguaje:	English
Publicado:	Hindawi Publishing Corporation 2017
Materias:	Research Article
Acceso en línea:	https://www.ncbi.nlm.nih.gov/pmc/articles/PMC5322572/ https://www.ncbi.nlm.nih.gov/pubmed/28280740 http://dx.doi.org/10.1155/2017/7457131

Ejemplares similares

mmnet: An R Package for Metagenomics Systems Biology Analysis
por: Cao, Yang, et al.
Publicado: (2015)

Use of Natural Family Planning (NFP) and Its Effect on Couple Relationships and Sexual Satisfaction: A Multi-Country Survey of NFP Users from US and Europe
por: Unseld, Matthias, et al.
Publicado: (2017)

RevEcoR: an R package for the reverse ecology analysis of microbiomes
por: Cao, Yang, et al.
Publicado: (2016)

Contribution of NFP LysM Domains to the Recognition of Nod Factors during the Medicago truncatula/Sinorhizobium meliloti Symbiosis
por: Bensmihen, Sandra, et al.
Publicado: (2011)

Pre-clinical validation of a pan-cancer CAR-T cell immunotherapy targeting nfP2X7
por: Bandara, Veronika, et al.
Publicado: (2023)

AnnotationBustR: an R package to extract subsequences from GenBank annotations
por: Borstein, Samuel R., et al.
Publicado: (2018)

ATP in the tumour microenvironment drives expression of nfP2X(7), a key mediator of cancer cell survival
por: Gilbert, SM, et al.
Publicado: (2018)

haploR: an R package for querying web-based annotation tools
por: Zhbannikov, Ilya Y., et al.
Publicado: (2017)

Interaction of Medicago truncatula Lysin Motif Receptor-Like Kinases, NFP and LYK3, Produced in Nicotiana benthamiana Induces Defence-Like Responses
por: Pietraszewska-Bogiel, Anna, et al.
Publicado: (2013)

GOsummaries: an R Package for Visual Functional Annotation of Experimental Data
por: Kolde, Raivo, et al.
Publicado: (2015)

topr: an R package for viewing and annotating genetic association results
por: Juliusdottir, Thorhildur
Publicado: (2023)

Transcript annotation tool (TransAT): an R package for retrieving annotations for transcript-specific genetic variants
por: Shih, Ching-Yu, et al.
Publicado: (2021)

dcGOR: An R Package for Analysing Ontologies and Protein Domain Annotations
por: Fang, Hai
Publicado: (2014)

FocalCall: An R Package for the Annotation of Focal Copy Number Aberrations
por: Krijgsman, Oscar, et al.
Publicado: (2014)

snpGeneSets: An R Package for Genome-Wide Study Annotation
por: Mei, Hao, et al.
Publicado: (2016)

ReFernment: An R package for annotating RNA editing in plastid genomes
por: Robison, Tanner A., et al.
Publicado: (2019)

ensembldb: an R package to create and use Ensembl-based annotation resources
por: Rainer, Johannes, et al.
Publicado: (2019)

GAPGOM—an R package for gene annotation prediction using GO Metrics
por: van Mourik, Casper, et al.
Publicado: (2021)

NFPscanner: a webtool for knowledge-based deciphering of biomedical networks
por: Xu, Wenjian, et al.
Publicado: (2017)

Corbi: a new R package for biological network alignment and querying
por: Huang, Qiang, et al.
Publicado: (2013)

RCX—an R package adapting the Cytoscape Exchange format for biological networks
por: Auer, Florian, et al.
Publicado: (2022)

VAN: an R package for identifying biologically perturbed networks via differential variability analysis
por: Jayaswal, Vivek, et al.
Publicado: (2013)

ggcoverage: an R package to visualize and annotate genome coverage for various NGS data
por: Song, Yabing, et al.
Publicado: (2023)

Complete Genome Sequence of a Chemolithoautotrophic Iron-Oxidizing Bacterium, Acidithiobacillus ferrooxidans Strain NFP31, Isolated from Volcanic Ash Deposits on Miyake-Jima, Japan
por: Kato, Tatsuhiro, et al.
Publicado: (2022)

annoFuse: an R Package to annotate, prioritize, and interactively explore putative oncogenic RNA fusions
por: Gaonkar, Krutika S., et al.
Publicado: (2020)

BioMethyl: an R package for biological interpretation of DNA methylation data
por: Wang, Yue, et al.
Publicado: (2019)

NuChart: An R Package to Study Gene Spatial Neighbourhoods with Multi-Omics Annotations
por: Merelli, Ivan, et al.
Publicado: (2013)

ProbMetab: an R package for Bayesian probabilistic annotation of LC–MS-based metabolomics
por: Silva, Ricardo R., et al.
Publicado: (2014)

massPix: an R package for annotation and interpretation of mass spectrometry imaging data for lipidomics
por: Bond, Nicholas J., et al.
Publicado: (2017)

CANDI: an R package and Shiny app for annotating radiographs and evaluating computer-aided diagnosis
por: Badgeley, Marcus A, et al.
Publicado: (2019)

metID: an R package for automatable compound annotation for LC−MS-based data
por: Shen, Xiaotao, et al.
Publicado: (2021)

Evaluation of Cell Type Annotation R Packages on Single-cell RNA-seq Data
por: Huang, Qianhui, et al.
Publicado: (2021)

ChromoMap: an R package for interactive visualization of multi-omics data and annotation of chromosomes
por: Anand, Lakshay, et al.
Publicado: (2022)

COGNATE: comparative gene annotation characterizer
por: Wilbrandt, Jeanne, et al.
Publicado: (2017)

SER: An R package to characterize environmental regimes
por: Wu, Naicheng, et al.
Publicado: (2023)

NetWeAvers: an R package for integrative biological network analysis with mass spectrometry data
por: McClellan, Elizabeth A., et al.
Publicado: (2013)

dna: An R package for differential network analysis
por: Gill, Ryan, et al.
Publicado: (2014)

backbone: An R package to extract network backbones
por: Neal, Zachary P.
Publicado: (2022)

Eval: A software package for analysis of genome annotations
por: Keibler, Evan, et al.
Publicado: (2003)

SquamataBase: a natural history database and R package for comparative biology of snake feeding habits
por: Grundler, Michael C.
Publicado: (2020)

Cannot write session to /tmp/vufind_sessions/sess_u044979ktli7051dla342dcfek