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High-quality-draft genome sequence of the fermenting bacterium Anaerobium acetethylicum type strain GluBS11(T) (DSM 29698)
Anaerobium acetethylicum strain GluBS11(T) belongs to the family Lachnospiraceae within the order Clostridiales. It is a Gram-positive, non-motile and strictly anaerobic bacterium isolated from biogas slurry that was originally enriched with gluconate as carbon source (Patil, et al., Int J Syst Evol...
Autores principales: | , , , , , , , , , , , , , , , , , |
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Formato: | Online Artículo Texto |
Lenguaje: | English |
Publicado: |
BioMed Central
2017
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Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC5322786/ https://www.ncbi.nlm.nih.gov/pubmed/28250895 http://dx.doi.org/10.1186/s40793-017-0236-4 |
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author | Patil, Yogita Müller, Nicolai Schink, Bernhard Whitman, William B. Huntemann, Marcel Clum, Alicia Pillay, Manoj Palaniappan, Krishnaveni Varghese, Neha Mikhailova, Natalia Stamatis, Dimitrios Reddy, T. B. K. Daum, Chris Shapiro, Nicole Ivanova, Natalia Kyrpides, Nikos Woyke, Tanja Junghare, Madan |
author_facet | Patil, Yogita Müller, Nicolai Schink, Bernhard Whitman, William B. Huntemann, Marcel Clum, Alicia Pillay, Manoj Palaniappan, Krishnaveni Varghese, Neha Mikhailova, Natalia Stamatis, Dimitrios Reddy, T. B. K. Daum, Chris Shapiro, Nicole Ivanova, Natalia Kyrpides, Nikos Woyke, Tanja Junghare, Madan |
author_sort | Patil, Yogita |
collection | PubMed |
description | Anaerobium acetethylicum strain GluBS11(T) belongs to the family Lachnospiraceae within the order Clostridiales. It is a Gram-positive, non-motile and strictly anaerobic bacterium isolated from biogas slurry that was originally enriched with gluconate as carbon source (Patil, et al., Int J Syst Evol Microbiol 65:3289-3296, 2015). Here we describe the draft genome sequence of strain GluBS11(T) and provide a detailed insight into its physiological and metabolic features. The draft genome sequence generated 4,609,043 bp, distributed among 105 scaffolds assembled using the SPAdes genome assembler method. It comprises in total 4,132 genes, of which 4,008 were predicted to be protein coding genes, 124 RNA genes and 867 pseudogenes. The G + C content was 43.51 mol %. The annotated genome of strain GluBS11(T) contains putative genes coding for the pentose phosphate pathway, the Embden-Meyerhoff-Parnas pathway, the Entner-Doudoroff pathway and the tricarboxylic acid cycle. The genome revealed the presence of most of the necessary genes required for the fermentation of glucose and gluconate to acetate, ethanol, and hydrogen gas. However, a candidate gene for production of formate was not identified. ELECTRONIC SUPPLEMENTARY MATERIAL: The online version of this article (doi:10.1186/s40793-017-0236-4) contains supplementary material, which is available to authorized users. |
format | Online Article Text |
id | pubmed-5322786 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2017 |
publisher | BioMed Central |
record_format | MEDLINE/PubMed |
spelling | pubmed-53227862017-03-01 High-quality-draft genome sequence of the fermenting bacterium Anaerobium acetethylicum type strain GluBS11(T) (DSM 29698) Patil, Yogita Müller, Nicolai Schink, Bernhard Whitman, William B. Huntemann, Marcel Clum, Alicia Pillay, Manoj Palaniappan, Krishnaveni Varghese, Neha Mikhailova, Natalia Stamatis, Dimitrios Reddy, T. B. K. Daum, Chris Shapiro, Nicole Ivanova, Natalia Kyrpides, Nikos Woyke, Tanja Junghare, Madan Stand Genomic Sci Short Genome Report Anaerobium acetethylicum strain GluBS11(T) belongs to the family Lachnospiraceae within the order Clostridiales. It is a Gram-positive, non-motile and strictly anaerobic bacterium isolated from biogas slurry that was originally enriched with gluconate as carbon source (Patil, et al., Int J Syst Evol Microbiol 65:3289-3296, 2015). Here we describe the draft genome sequence of strain GluBS11(T) and provide a detailed insight into its physiological and metabolic features. The draft genome sequence generated 4,609,043 bp, distributed among 105 scaffolds assembled using the SPAdes genome assembler method. It comprises in total 4,132 genes, of which 4,008 were predicted to be protein coding genes, 124 RNA genes and 867 pseudogenes. The G + C content was 43.51 mol %. The annotated genome of strain GluBS11(T) contains putative genes coding for the pentose phosphate pathway, the Embden-Meyerhoff-Parnas pathway, the Entner-Doudoroff pathway and the tricarboxylic acid cycle. The genome revealed the presence of most of the necessary genes required for the fermentation of glucose and gluconate to acetate, ethanol, and hydrogen gas. However, a candidate gene for production of formate was not identified. ELECTRONIC SUPPLEMENTARY MATERIAL: The online version of this article (doi:10.1186/s40793-017-0236-4) contains supplementary material, which is available to authorized users. BioMed Central 2017-02-20 /pmc/articles/PMC5322786/ /pubmed/28250895 http://dx.doi.org/10.1186/s40793-017-0236-4 Text en © The Author(s). 2017 Open AccessThis article is distributed under the terms of the Creative Commons Attribution 4.0 International License (http://creativecommons.org/licenses/by/4.0/), which permits unrestricted use, distribution, and reproduction in any medium, provided you give appropriate credit to the original author(s) and the source, provide a link to the Creative Commons license, and indicate if changes were made. The Creative Commons Public Domain Dedication waiver (http://creativecommons.org/publicdomain/zero/1.0/) applies to the data made available in this article, unless otherwise stated. |
spellingShingle | Short Genome Report Patil, Yogita Müller, Nicolai Schink, Bernhard Whitman, William B. Huntemann, Marcel Clum, Alicia Pillay, Manoj Palaniappan, Krishnaveni Varghese, Neha Mikhailova, Natalia Stamatis, Dimitrios Reddy, T. B. K. Daum, Chris Shapiro, Nicole Ivanova, Natalia Kyrpides, Nikos Woyke, Tanja Junghare, Madan High-quality-draft genome sequence of the fermenting bacterium Anaerobium acetethylicum type strain GluBS11(T) (DSM 29698) |
title | High-quality-draft genome sequence of the fermenting bacterium Anaerobium acetethylicum type strain GluBS11(T) (DSM 29698) |
title_full | High-quality-draft genome sequence of the fermenting bacterium Anaerobium acetethylicum type strain GluBS11(T) (DSM 29698) |
title_fullStr | High-quality-draft genome sequence of the fermenting bacterium Anaerobium acetethylicum type strain GluBS11(T) (DSM 29698) |
title_full_unstemmed | High-quality-draft genome sequence of the fermenting bacterium Anaerobium acetethylicum type strain GluBS11(T) (DSM 29698) |
title_short | High-quality-draft genome sequence of the fermenting bacterium Anaerobium acetethylicum type strain GluBS11(T) (DSM 29698) |
title_sort | high-quality-draft genome sequence of the fermenting bacterium anaerobium acetethylicum type strain glubs11(t) (dsm 29698) |
topic | Short Genome Report |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC5322786/ https://www.ncbi.nlm.nih.gov/pubmed/28250895 http://dx.doi.org/10.1186/s40793-017-0236-4 |
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