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Cluster analysis of sputum cytokine-high profiles reveals diversity in T(h)2-high asthma patients

BACKGROUND: Asthma is characterized by a heterogeneous inflammatory profile and can be subdivided into T(h)2-high and T(h)2-low airway inflammation. Profiling of a broader panel of airway cytokines in large unselected patient cohorts is lacking. METHODS: Patients (n = 205) were defined as being “cyt...

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Autores principales: Seys, Sven F., Scheers, Hans, Van den Brande, Paul, Marijsse, Gudrun, Dilissen, Ellen, Van Den Bergh, Annelies, Goeminne, Pieter C., Hellings, Peter W, Ceuppens, Jan L., Dupont, Lieven J, Bullens, Dominique M. A.
Formato: Online Artículo Texto
Lenguaje:English
Publicado: BioMed Central 2017
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC5324270/
https://www.ncbi.nlm.nih.gov/pubmed/28231834
http://dx.doi.org/10.1186/s12931-017-0524-y
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author Seys, Sven F.
Scheers, Hans
Van den Brande, Paul
Marijsse, Gudrun
Dilissen, Ellen
Van Den Bergh, Annelies
Goeminne, Pieter C.
Hellings, Peter W
Ceuppens, Jan L.
Dupont, Lieven J
Bullens, Dominique M. A.
author_facet Seys, Sven F.
Scheers, Hans
Van den Brande, Paul
Marijsse, Gudrun
Dilissen, Ellen
Van Den Bergh, Annelies
Goeminne, Pieter C.
Hellings, Peter W
Ceuppens, Jan L.
Dupont, Lieven J
Bullens, Dominique M. A.
author_sort Seys, Sven F.
collection PubMed
description BACKGROUND: Asthma is characterized by a heterogeneous inflammatory profile and can be subdivided into T(h)2-high and T(h)2-low airway inflammation. Profiling of a broader panel of airway cytokines in large unselected patient cohorts is lacking. METHODS: Patients (n = 205) were defined as being “cytokine-low/high” if sputum mRNA expression of a particular cytokine was outside the respective 10(th)/90(th) percentile range of the control group (n = 80). Unsupervised hierarchical clustering was used to determine clusters based on sputum cytokine profiles. RESULTS: Half of patients (n = 108; 52.6%) had a classical T(h)2-high (“IL-4-, IL-5- and/or IL-13-high”) sputum cytokine profile. Unsupervised cluster analysis revealed 5 clusters. Patients with an “IL-4- and/or IL-13-high” pattern surprisingly did not cluster but were equally distributed among the 5 clusters. Patients with an “IL-5-, IL-17A-/F- and IL-25- high” profile were restricted to cluster 1 (n = 24) with increased sputum eosinophil as well as neutrophil counts and poor lung function parameters at baseline and 2 years later. Four other clusters were identified: “IL-5-high or IL-10-high” (n = 16), “IL-6-high” (n = 8), “IL-22-high” (n = 25). Cluster 5 (n = 132) consists of patients without “cytokine-high” pattern or patients with only high IL-4 and/or IL-13. CONCLUSION: We identified 5 unique asthma molecular phenotypes by biological clustering. Type 2 cytokines cluster with non-type 2 cytokines in 4 out of 5 clusters. Unsupervised analysis thus not supports a priori type 2 versus non-type 2 molecular phenotypes. www.clinicaltrials.gov NCT01224938. Registered 18 October 2010. ELECTRONIC SUPPLEMENTARY MATERIAL: The online version of this article (doi:10.1186/s12931-017-0524-y) contains supplementary material, which is available to authorized users.
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spelling pubmed-53242702017-03-01 Cluster analysis of sputum cytokine-high profiles reveals diversity in T(h)2-high asthma patients Seys, Sven F. Scheers, Hans Van den Brande, Paul Marijsse, Gudrun Dilissen, Ellen Van Den Bergh, Annelies Goeminne, Pieter C. Hellings, Peter W Ceuppens, Jan L. Dupont, Lieven J Bullens, Dominique M. A. Respir Res Research BACKGROUND: Asthma is characterized by a heterogeneous inflammatory profile and can be subdivided into T(h)2-high and T(h)2-low airway inflammation. Profiling of a broader panel of airway cytokines in large unselected patient cohorts is lacking. METHODS: Patients (n = 205) were defined as being “cytokine-low/high” if sputum mRNA expression of a particular cytokine was outside the respective 10(th)/90(th) percentile range of the control group (n = 80). Unsupervised hierarchical clustering was used to determine clusters based on sputum cytokine profiles. RESULTS: Half of patients (n = 108; 52.6%) had a classical T(h)2-high (“IL-4-, IL-5- and/or IL-13-high”) sputum cytokine profile. Unsupervised cluster analysis revealed 5 clusters. Patients with an “IL-4- and/or IL-13-high” pattern surprisingly did not cluster but were equally distributed among the 5 clusters. Patients with an “IL-5-, IL-17A-/F- and IL-25- high” profile were restricted to cluster 1 (n = 24) with increased sputum eosinophil as well as neutrophil counts and poor lung function parameters at baseline and 2 years later. Four other clusters were identified: “IL-5-high or IL-10-high” (n = 16), “IL-6-high” (n = 8), “IL-22-high” (n = 25). Cluster 5 (n = 132) consists of patients without “cytokine-high” pattern or patients with only high IL-4 and/or IL-13. CONCLUSION: We identified 5 unique asthma molecular phenotypes by biological clustering. Type 2 cytokines cluster with non-type 2 cytokines in 4 out of 5 clusters. Unsupervised analysis thus not supports a priori type 2 versus non-type 2 molecular phenotypes. www.clinicaltrials.gov NCT01224938. Registered 18 October 2010. ELECTRONIC SUPPLEMENTARY MATERIAL: The online version of this article (doi:10.1186/s12931-017-0524-y) contains supplementary material, which is available to authorized users. BioMed Central 2017-02-23 2017 /pmc/articles/PMC5324270/ /pubmed/28231834 http://dx.doi.org/10.1186/s12931-017-0524-y Text en © The Author(s). 2017 Open AccessThis article is distributed under the terms of the Creative Commons Attribution 4.0 International License (http://creativecommons.org/licenses/by/4.0/), which permits unrestricted use, distribution, and reproduction in any medium, provided you give appropriate credit to the original author(s) and the source, provide a link to the Creative Commons license, and indicate if changes were made. The Creative Commons Public Domain Dedication waiver (http://creativecommons.org/publicdomain/zero/1.0/) applies to the data made available in this article, unless otherwise stated.
spellingShingle Research
Seys, Sven F.
Scheers, Hans
Van den Brande, Paul
Marijsse, Gudrun
Dilissen, Ellen
Van Den Bergh, Annelies
Goeminne, Pieter C.
Hellings, Peter W
Ceuppens, Jan L.
Dupont, Lieven J
Bullens, Dominique M. A.
Cluster analysis of sputum cytokine-high profiles reveals diversity in T(h)2-high asthma patients
title Cluster analysis of sputum cytokine-high profiles reveals diversity in T(h)2-high asthma patients
title_full Cluster analysis of sputum cytokine-high profiles reveals diversity in T(h)2-high asthma patients
title_fullStr Cluster analysis of sputum cytokine-high profiles reveals diversity in T(h)2-high asthma patients
title_full_unstemmed Cluster analysis of sputum cytokine-high profiles reveals diversity in T(h)2-high asthma patients
title_short Cluster analysis of sputum cytokine-high profiles reveals diversity in T(h)2-high asthma patients
title_sort cluster analysis of sputum cytokine-high profiles reveals diversity in t(h)2-high asthma patients
topic Research
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC5324270/
https://www.ncbi.nlm.nih.gov/pubmed/28231834
http://dx.doi.org/10.1186/s12931-017-0524-y
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