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Cluster analysis of sputum cytokine-high profiles reveals diversity in T(h)2-high asthma patients
BACKGROUND: Asthma is characterized by a heterogeneous inflammatory profile and can be subdivided into T(h)2-high and T(h)2-low airway inflammation. Profiling of a broader panel of airway cytokines in large unselected patient cohorts is lacking. METHODS: Patients (n = 205) were defined as being “cyt...
Autores principales: | , , , , , , , , , , |
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Formato: | Online Artículo Texto |
Lenguaje: | English |
Publicado: |
BioMed Central
2017
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Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC5324270/ https://www.ncbi.nlm.nih.gov/pubmed/28231834 http://dx.doi.org/10.1186/s12931-017-0524-y |
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author | Seys, Sven F. Scheers, Hans Van den Brande, Paul Marijsse, Gudrun Dilissen, Ellen Van Den Bergh, Annelies Goeminne, Pieter C. Hellings, Peter W Ceuppens, Jan L. Dupont, Lieven J Bullens, Dominique M. A. |
author_facet | Seys, Sven F. Scheers, Hans Van den Brande, Paul Marijsse, Gudrun Dilissen, Ellen Van Den Bergh, Annelies Goeminne, Pieter C. Hellings, Peter W Ceuppens, Jan L. Dupont, Lieven J Bullens, Dominique M. A. |
author_sort | Seys, Sven F. |
collection | PubMed |
description | BACKGROUND: Asthma is characterized by a heterogeneous inflammatory profile and can be subdivided into T(h)2-high and T(h)2-low airway inflammation. Profiling of a broader panel of airway cytokines in large unselected patient cohorts is lacking. METHODS: Patients (n = 205) were defined as being “cytokine-low/high” if sputum mRNA expression of a particular cytokine was outside the respective 10(th)/90(th) percentile range of the control group (n = 80). Unsupervised hierarchical clustering was used to determine clusters based on sputum cytokine profiles. RESULTS: Half of patients (n = 108; 52.6%) had a classical T(h)2-high (“IL-4-, IL-5- and/or IL-13-high”) sputum cytokine profile. Unsupervised cluster analysis revealed 5 clusters. Patients with an “IL-4- and/or IL-13-high” pattern surprisingly did not cluster but were equally distributed among the 5 clusters. Patients with an “IL-5-, IL-17A-/F- and IL-25- high” profile were restricted to cluster 1 (n = 24) with increased sputum eosinophil as well as neutrophil counts and poor lung function parameters at baseline and 2 years later. Four other clusters were identified: “IL-5-high or IL-10-high” (n = 16), “IL-6-high” (n = 8), “IL-22-high” (n = 25). Cluster 5 (n = 132) consists of patients without “cytokine-high” pattern or patients with only high IL-4 and/or IL-13. CONCLUSION: We identified 5 unique asthma molecular phenotypes by biological clustering. Type 2 cytokines cluster with non-type 2 cytokines in 4 out of 5 clusters. Unsupervised analysis thus not supports a priori type 2 versus non-type 2 molecular phenotypes. www.clinicaltrials.gov NCT01224938. Registered 18 October 2010. ELECTRONIC SUPPLEMENTARY MATERIAL: The online version of this article (doi:10.1186/s12931-017-0524-y) contains supplementary material, which is available to authorized users. |
format | Online Article Text |
id | pubmed-5324270 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2017 |
publisher | BioMed Central |
record_format | MEDLINE/PubMed |
spelling | pubmed-53242702017-03-01 Cluster analysis of sputum cytokine-high profiles reveals diversity in T(h)2-high asthma patients Seys, Sven F. Scheers, Hans Van den Brande, Paul Marijsse, Gudrun Dilissen, Ellen Van Den Bergh, Annelies Goeminne, Pieter C. Hellings, Peter W Ceuppens, Jan L. Dupont, Lieven J Bullens, Dominique M. A. Respir Res Research BACKGROUND: Asthma is characterized by a heterogeneous inflammatory profile and can be subdivided into T(h)2-high and T(h)2-low airway inflammation. Profiling of a broader panel of airway cytokines in large unselected patient cohorts is lacking. METHODS: Patients (n = 205) were defined as being “cytokine-low/high” if sputum mRNA expression of a particular cytokine was outside the respective 10(th)/90(th) percentile range of the control group (n = 80). Unsupervised hierarchical clustering was used to determine clusters based on sputum cytokine profiles. RESULTS: Half of patients (n = 108; 52.6%) had a classical T(h)2-high (“IL-4-, IL-5- and/or IL-13-high”) sputum cytokine profile. Unsupervised cluster analysis revealed 5 clusters. Patients with an “IL-4- and/or IL-13-high” pattern surprisingly did not cluster but were equally distributed among the 5 clusters. Patients with an “IL-5-, IL-17A-/F- and IL-25- high” profile were restricted to cluster 1 (n = 24) with increased sputum eosinophil as well as neutrophil counts and poor lung function parameters at baseline and 2 years later. Four other clusters were identified: “IL-5-high or IL-10-high” (n = 16), “IL-6-high” (n = 8), “IL-22-high” (n = 25). Cluster 5 (n = 132) consists of patients without “cytokine-high” pattern or patients with only high IL-4 and/or IL-13. CONCLUSION: We identified 5 unique asthma molecular phenotypes by biological clustering. Type 2 cytokines cluster with non-type 2 cytokines in 4 out of 5 clusters. Unsupervised analysis thus not supports a priori type 2 versus non-type 2 molecular phenotypes. www.clinicaltrials.gov NCT01224938. Registered 18 October 2010. ELECTRONIC SUPPLEMENTARY MATERIAL: The online version of this article (doi:10.1186/s12931-017-0524-y) contains supplementary material, which is available to authorized users. BioMed Central 2017-02-23 2017 /pmc/articles/PMC5324270/ /pubmed/28231834 http://dx.doi.org/10.1186/s12931-017-0524-y Text en © The Author(s). 2017 Open AccessThis article is distributed under the terms of the Creative Commons Attribution 4.0 International License (http://creativecommons.org/licenses/by/4.0/), which permits unrestricted use, distribution, and reproduction in any medium, provided you give appropriate credit to the original author(s) and the source, provide a link to the Creative Commons license, and indicate if changes were made. The Creative Commons Public Domain Dedication waiver (http://creativecommons.org/publicdomain/zero/1.0/) applies to the data made available in this article, unless otherwise stated. |
spellingShingle | Research Seys, Sven F. Scheers, Hans Van den Brande, Paul Marijsse, Gudrun Dilissen, Ellen Van Den Bergh, Annelies Goeminne, Pieter C. Hellings, Peter W Ceuppens, Jan L. Dupont, Lieven J Bullens, Dominique M. A. Cluster analysis of sputum cytokine-high profiles reveals diversity in T(h)2-high asthma patients |
title | Cluster analysis of sputum cytokine-high profiles reveals diversity in T(h)2-high asthma patients |
title_full | Cluster analysis of sputum cytokine-high profiles reveals diversity in T(h)2-high asthma patients |
title_fullStr | Cluster analysis of sputum cytokine-high profiles reveals diversity in T(h)2-high asthma patients |
title_full_unstemmed | Cluster analysis of sputum cytokine-high profiles reveals diversity in T(h)2-high asthma patients |
title_short | Cluster analysis of sputum cytokine-high profiles reveals diversity in T(h)2-high asthma patients |
title_sort | cluster analysis of sputum cytokine-high profiles reveals diversity in t(h)2-high asthma patients |
topic | Research |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC5324270/ https://www.ncbi.nlm.nih.gov/pubmed/28231834 http://dx.doi.org/10.1186/s12931-017-0524-y |
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