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Does metabolite channeling accelerate enzyme-catalyzed cascade reactions?
Metabolite or substrate channeling is a direct transfer of metabolites from one enzyme to the next enzyme in a cascade. Among many potential advantages of substrate channeling, acceleration of the total reaction rate is considered as one of the most important and self-evident. However, using a simpl...
Autores principales: | , , |
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Formato: | Online Artículo Texto |
Lenguaje: | English |
Publicado: |
Public Library of Science
2017
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Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC5325314/ https://www.ncbi.nlm.nih.gov/pubmed/28234973 http://dx.doi.org/10.1371/journal.pone.0172673 |
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author | Poshyvailo, Liubov von Lieres, Eric Kondrat, Svyatoslav |
author_facet | Poshyvailo, Liubov von Lieres, Eric Kondrat, Svyatoslav |
author_sort | Poshyvailo, Liubov |
collection | PubMed |
description | Metabolite or substrate channeling is a direct transfer of metabolites from one enzyme to the next enzyme in a cascade. Among many potential advantages of substrate channeling, acceleration of the total reaction rate is considered as one of the most important and self-evident. However, using a simple model, supported by stochastic simulations, we show that it is not always the case; particularly at long times (i.e. in steady state) and high substrate concentrations, a channeled reaction cannot be faster, and can even be slower, than the original non-channeled cascade reaction. In addition we show that increasing the degree of channeling may lead to an increase of the metabolite pool size. We substantiate that the main advantage of channeling likely lies in protecting metabolites from degradation or competing side reactions. |
format | Online Article Text |
id | pubmed-5325314 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2017 |
publisher | Public Library of Science |
record_format | MEDLINE/PubMed |
spelling | pubmed-53253142017-03-09 Does metabolite channeling accelerate enzyme-catalyzed cascade reactions? Poshyvailo, Liubov von Lieres, Eric Kondrat, Svyatoslav PLoS One Research Article Metabolite or substrate channeling is a direct transfer of metabolites from one enzyme to the next enzyme in a cascade. Among many potential advantages of substrate channeling, acceleration of the total reaction rate is considered as one of the most important and self-evident. However, using a simple model, supported by stochastic simulations, we show that it is not always the case; particularly at long times (i.e. in steady state) and high substrate concentrations, a channeled reaction cannot be faster, and can even be slower, than the original non-channeled cascade reaction. In addition we show that increasing the degree of channeling may lead to an increase of the metabolite pool size. We substantiate that the main advantage of channeling likely lies in protecting metabolites from degradation or competing side reactions. Public Library of Science 2017-02-24 /pmc/articles/PMC5325314/ /pubmed/28234973 http://dx.doi.org/10.1371/journal.pone.0172673 Text en © 2017 Poshyvailo et al http://creativecommons.org/licenses/by/4.0/ This is an open access article distributed under the terms of the Creative Commons Attribution License (http://creativecommons.org/licenses/by/4.0/) , which permits unrestricted use, distribution, and reproduction in any medium, provided the original author and source are credited. |
spellingShingle | Research Article Poshyvailo, Liubov von Lieres, Eric Kondrat, Svyatoslav Does metabolite channeling accelerate enzyme-catalyzed cascade reactions? |
title | Does metabolite channeling accelerate enzyme-catalyzed cascade reactions? |
title_full | Does metabolite channeling accelerate enzyme-catalyzed cascade reactions? |
title_fullStr | Does metabolite channeling accelerate enzyme-catalyzed cascade reactions? |
title_full_unstemmed | Does metabolite channeling accelerate enzyme-catalyzed cascade reactions? |
title_short | Does metabolite channeling accelerate enzyme-catalyzed cascade reactions? |
title_sort | does metabolite channeling accelerate enzyme-catalyzed cascade reactions? |
topic | Research Article |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC5325314/ https://www.ncbi.nlm.nih.gov/pubmed/28234973 http://dx.doi.org/10.1371/journal.pone.0172673 |
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