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Does metabolite channeling accelerate enzyme-catalyzed cascade reactions?

Metabolite or substrate channeling is a direct transfer of metabolites from one enzyme to the next enzyme in a cascade. Among many potential advantages of substrate channeling, acceleration of the total reaction rate is considered as one of the most important and self-evident. However, using a simpl...

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Detalles Bibliográficos
Autores principales: Poshyvailo, Liubov, von Lieres, Eric, Kondrat, Svyatoslav
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Public Library of Science 2017
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC5325314/
https://www.ncbi.nlm.nih.gov/pubmed/28234973
http://dx.doi.org/10.1371/journal.pone.0172673
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author Poshyvailo, Liubov
von Lieres, Eric
Kondrat, Svyatoslav
author_facet Poshyvailo, Liubov
von Lieres, Eric
Kondrat, Svyatoslav
author_sort Poshyvailo, Liubov
collection PubMed
description Metabolite or substrate channeling is a direct transfer of metabolites from one enzyme to the next enzyme in a cascade. Among many potential advantages of substrate channeling, acceleration of the total reaction rate is considered as one of the most important and self-evident. However, using a simple model, supported by stochastic simulations, we show that it is not always the case; particularly at long times (i.e. in steady state) and high substrate concentrations, a channeled reaction cannot be faster, and can even be slower, than the original non-channeled cascade reaction. In addition we show that increasing the degree of channeling may lead to an increase of the metabolite pool size. We substantiate that the main advantage of channeling likely lies in protecting metabolites from degradation or competing side reactions.
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spelling pubmed-53253142017-03-09 Does metabolite channeling accelerate enzyme-catalyzed cascade reactions? Poshyvailo, Liubov von Lieres, Eric Kondrat, Svyatoslav PLoS One Research Article Metabolite or substrate channeling is a direct transfer of metabolites from one enzyme to the next enzyme in a cascade. Among many potential advantages of substrate channeling, acceleration of the total reaction rate is considered as one of the most important and self-evident. However, using a simple model, supported by stochastic simulations, we show that it is not always the case; particularly at long times (i.e. in steady state) and high substrate concentrations, a channeled reaction cannot be faster, and can even be slower, than the original non-channeled cascade reaction. In addition we show that increasing the degree of channeling may lead to an increase of the metabolite pool size. We substantiate that the main advantage of channeling likely lies in protecting metabolites from degradation or competing side reactions. Public Library of Science 2017-02-24 /pmc/articles/PMC5325314/ /pubmed/28234973 http://dx.doi.org/10.1371/journal.pone.0172673 Text en © 2017 Poshyvailo et al http://creativecommons.org/licenses/by/4.0/ This is an open access article distributed under the terms of the Creative Commons Attribution License (http://creativecommons.org/licenses/by/4.0/) , which permits unrestricted use, distribution, and reproduction in any medium, provided the original author and source are credited.
spellingShingle Research Article
Poshyvailo, Liubov
von Lieres, Eric
Kondrat, Svyatoslav
Does metabolite channeling accelerate enzyme-catalyzed cascade reactions?
title Does metabolite channeling accelerate enzyme-catalyzed cascade reactions?
title_full Does metabolite channeling accelerate enzyme-catalyzed cascade reactions?
title_fullStr Does metabolite channeling accelerate enzyme-catalyzed cascade reactions?
title_full_unstemmed Does metabolite channeling accelerate enzyme-catalyzed cascade reactions?
title_short Does metabolite channeling accelerate enzyme-catalyzed cascade reactions?
title_sort does metabolite channeling accelerate enzyme-catalyzed cascade reactions?
topic Research Article
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC5325314/
https://www.ncbi.nlm.nih.gov/pubmed/28234973
http://dx.doi.org/10.1371/journal.pone.0172673
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