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The application of tailor-made force fields and molecular dynamics for NMR crystallography: a case study of free base cocaine
Motional averaging has been proven to be significant in predicting the chemical shifts in ab initio solid-state NMR calculations, and the applicability of motional averaging with molecular dynamics has been shown to depend on the accuracy of the molecular mechanical force field. The performance of a...
Autores principales: | , , |
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Formato: | Online Artículo Texto |
Lenguaje: | English |
Publicado: |
International Union of Crystallography
2017
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Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC5330528/ https://www.ncbi.nlm.nih.gov/pubmed/28250956 http://dx.doi.org/10.1107/S2052252517001415 |
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author | Li, Xiaozhou Neumann, Marcus A. van de Streek, Jacco |
author_facet | Li, Xiaozhou Neumann, Marcus A. van de Streek, Jacco |
author_sort | Li, Xiaozhou |
collection | PubMed |
description | Motional averaging has been proven to be significant in predicting the chemical shifts in ab initio solid-state NMR calculations, and the applicability of motional averaging with molecular dynamics has been shown to depend on the accuracy of the molecular mechanical force field. The performance of a fully automatically generated tailor-made force field (TMFF) for the dynamic aspects of NMR crystallography is evaluated and compared with existing benchmarks, including static dispersion-corrected density functional theory calculations and the COMPASS force field. The crystal structure of free base cocaine is used as an example. The results reveal that, even though the TMFF outperforms the COMPASS force field for representing the energies and conformations of predicted structures, it does not give significant improvement in the accuracy of NMR calculations. Further studies should direct more attention to anisotropic chemical shifts and development of the method of solid-state NMR calculations. |
format | Online Article Text |
id | pubmed-5330528 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2017 |
publisher | International Union of Crystallography |
record_format | MEDLINE/PubMed |
spelling | pubmed-53305282017-03-01 The application of tailor-made force fields and molecular dynamics for NMR crystallography: a case study of free base cocaine Li, Xiaozhou Neumann, Marcus A. van de Streek, Jacco IUCrJ Research Papers Motional averaging has been proven to be significant in predicting the chemical shifts in ab initio solid-state NMR calculations, and the applicability of motional averaging with molecular dynamics has been shown to depend on the accuracy of the molecular mechanical force field. The performance of a fully automatically generated tailor-made force field (TMFF) for the dynamic aspects of NMR crystallography is evaluated and compared with existing benchmarks, including static dispersion-corrected density functional theory calculations and the COMPASS force field. The crystal structure of free base cocaine is used as an example. The results reveal that, even though the TMFF outperforms the COMPASS force field for representing the energies and conformations of predicted structures, it does not give significant improvement in the accuracy of NMR calculations. Further studies should direct more attention to anisotropic chemical shifts and development of the method of solid-state NMR calculations. International Union of Crystallography 2017-02-15 /pmc/articles/PMC5330528/ /pubmed/28250956 http://dx.doi.org/10.1107/S2052252517001415 Text en © Xiaozhou Li et al. 2017 http://creativecommons.org/licenses/by/2.0/uk/ This is an open-access article distributed under the terms of the Creative Commons Attribution (CC-BY) Licence, which permits unrestricted use, distribution, and reproduction in any medium, provided the original authors and source are cited.http://creativecommons.org/licenses/by/2.0/uk/ |
spellingShingle | Research Papers Li, Xiaozhou Neumann, Marcus A. van de Streek, Jacco The application of tailor-made force fields and molecular dynamics for NMR crystallography: a case study of free base cocaine |
title | The application of tailor-made force fields and molecular dynamics for NMR crystallography: a case study of free base cocaine |
title_full | The application of tailor-made force fields and molecular dynamics for NMR crystallography: a case study of free base cocaine |
title_fullStr | The application of tailor-made force fields and molecular dynamics for NMR crystallography: a case study of free base cocaine |
title_full_unstemmed | The application of tailor-made force fields and molecular dynamics for NMR crystallography: a case study of free base cocaine |
title_short | The application of tailor-made force fields and molecular dynamics for NMR crystallography: a case study of free base cocaine |
title_sort | application of tailor-made force fields and molecular dynamics for nmr crystallography: a case study of free base cocaine |
topic | Research Papers |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC5330528/ https://www.ncbi.nlm.nih.gov/pubmed/28250956 http://dx.doi.org/10.1107/S2052252517001415 |
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