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Activation Strain Analysis of S(N)2 Reactions at C, N, O, and F Centers
[Image: see text] Fundamental principles that determine chemical reactivity and reaction mechanisms are the very foundation of chemistry and many related fields of science. Bimolecular nucleophilic substitutions (S(N)2) are among the most common and therefore most important reaction types. In this r...
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Formato: | Online Artículo Texto |
Lenguaje: | English |
Publicado: |
American Chemical
Society
2017
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Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC5330660/ https://www.ncbi.nlm.nih.gov/pubmed/28045531 http://dx.doi.org/10.1021/acs.jpca.6b12240 |
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author | Kubelka, Jan Bickelhaupt, F. Matthias |
author_facet | Kubelka, Jan Bickelhaupt, F. Matthias |
author_sort | Kubelka, Jan |
collection | PubMed |
description | [Image: see text] Fundamental principles that determine chemical reactivity and reaction mechanisms are the very foundation of chemistry and many related fields of science. Bimolecular nucleophilic substitutions (S(N)2) are among the most common and therefore most important reaction types. In this report, we examine the trends in the S(N)2 reactions with respect to increasing electronegativity of the reaction center by comparing the well-studied backside S(N)2 Cl(–) + CH(3)Cl with similar Cl(–) substitutions on the isoelectronic series with the second period elements N, O, and F in place of C. Relativistic (ZORA) DFT calculations are used to construct the gas phase reaction potential energy surfaces (PES), and activation strain analysis, which allows decomposition of the PES into the geometrical strain and interaction energy, is employed to analyze the observed trends. We find that S(N)2@N and S(N)2@O have similar PES to the prototypical S(N)2@C, with the well-defined reaction complex (RC) local minima and a central barrier, but all stationary points are, respectively, increasingly stable in energy. The S(N)2@F, by contrast, exhibits only a single-well PES with no barrier. Using the activation strain model, we show that the trends are due to the interaction energy and originate mainly from the decreasing energy of the empty acceptor orbital (σ*(A–Cl)) on the reaction center A in the order of C, N, O, and F. The decreasing steric congestion around the central atom is also a likely contributor to this trend. Additional decomposition of the interaction energy using Kohn–Sham molecular orbital (KS-MO) theory provides further support for this explanation, as well as suggesting electrostatic energy as the primary reason for the distinct single-well PES profile for the FCl reaction. |
format | Online Article Text |
id | pubmed-5330660 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2017 |
publisher | American Chemical
Society |
record_format | MEDLINE/PubMed |
spelling | pubmed-53306602017-03-02 Activation Strain Analysis of S(N)2 Reactions at C, N, O, and F Centers Kubelka, Jan Bickelhaupt, F. Matthias J Phys Chem A [Image: see text] Fundamental principles that determine chemical reactivity and reaction mechanisms are the very foundation of chemistry and many related fields of science. Bimolecular nucleophilic substitutions (S(N)2) are among the most common and therefore most important reaction types. In this report, we examine the trends in the S(N)2 reactions with respect to increasing electronegativity of the reaction center by comparing the well-studied backside S(N)2 Cl(–) + CH(3)Cl with similar Cl(–) substitutions on the isoelectronic series with the second period elements N, O, and F in place of C. Relativistic (ZORA) DFT calculations are used to construct the gas phase reaction potential energy surfaces (PES), and activation strain analysis, which allows decomposition of the PES into the geometrical strain and interaction energy, is employed to analyze the observed trends. We find that S(N)2@N and S(N)2@O have similar PES to the prototypical S(N)2@C, with the well-defined reaction complex (RC) local minima and a central barrier, but all stationary points are, respectively, increasingly stable in energy. The S(N)2@F, by contrast, exhibits only a single-well PES with no barrier. Using the activation strain model, we show that the trends are due to the interaction energy and originate mainly from the decreasing energy of the empty acceptor orbital (σ*(A–Cl)) on the reaction center A in the order of C, N, O, and F. The decreasing steric congestion around the central atom is also a likely contributor to this trend. Additional decomposition of the interaction energy using Kohn–Sham molecular orbital (KS-MO) theory provides further support for this explanation, as well as suggesting electrostatic energy as the primary reason for the distinct single-well PES profile for the FCl reaction. American Chemical Society 2017-01-03 2017-02-02 /pmc/articles/PMC5330660/ /pubmed/28045531 http://dx.doi.org/10.1021/acs.jpca.6b12240 Text en Copyright © 2017 American Chemical Society This is an open access article published under a Creative Commons Non-Commercial No Derivative Works (CC-BY-NC-ND) Attribution License (http://pubs.acs.org/page/policy/authorchoice_ccbyncnd_termsofuse.html) , which permits copying and redistribution of the article, and creation of adaptations, all for non-commercial purposes. |
spellingShingle | Kubelka, Jan Bickelhaupt, F. Matthias Activation Strain Analysis of S(N)2 Reactions at C, N, O, and F Centers |
title | Activation Strain Analysis of S(N)2 Reactions
at C, N, O, and F Centers |
title_full | Activation Strain Analysis of S(N)2 Reactions
at C, N, O, and F Centers |
title_fullStr | Activation Strain Analysis of S(N)2 Reactions
at C, N, O, and F Centers |
title_full_unstemmed | Activation Strain Analysis of S(N)2 Reactions
at C, N, O, and F Centers |
title_short | Activation Strain Analysis of S(N)2 Reactions
at C, N, O, and F Centers |
title_sort | activation strain analysis of s(n)2 reactions
at c, n, o, and f centers |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC5330660/ https://www.ncbi.nlm.nih.gov/pubmed/28045531 http://dx.doi.org/10.1021/acs.jpca.6b12240 |
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