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Adaptive multiscapes: an up-to-date metaphor to visualize molecular adaptation

BACKGROUND: Wright’s metaphor of the fitness landscape has shaped and conditioned our view of the adaptation of populations for almost a century. Since its inception, and including criticism raised by Wright himself, the concept has been surrounded by controversy. Among others, the debate stems from...

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Autores principales: Catalán, Pablo, Arias, Clemente F., Cuesta, Jose A., Manrubia, Susanna
Formato: Online Artículo Texto
Lenguaje:English
Publicado: BioMed Central 2017
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC5331743/
https://www.ncbi.nlm.nih.gov/pubmed/28245845
http://dx.doi.org/10.1186/s13062-017-0178-1
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author Catalán, Pablo
Arias, Clemente F.
Cuesta, Jose A.
Manrubia, Susanna
author_facet Catalán, Pablo
Arias, Clemente F.
Cuesta, Jose A.
Manrubia, Susanna
author_sort Catalán, Pablo
collection PubMed
description BACKGROUND: Wright’s metaphor of the fitness landscape has shaped and conditioned our view of the adaptation of populations for almost a century. Since its inception, and including criticism raised by Wright himself, the concept has been surrounded by controversy. Among others, the debate stems from the intrinsic difficulty to capture important features of the space of genotypes, such as its high dimensionality or the existence of abundant ridges, in a visually appealing two-dimensional picture. Two additional currently widespread observations come to further constrain the applicability of the original metaphor: the very skewed distribution of phenotype sizes (which may actively prevent, due to entropic effects, the achievement of fitness maxima), and functional promiscuity (i.e. the existence of secondary functions which entail partial adaptation to environments never encountered before by the population). RESULTS: Here we revise some of the shortcomings of the fitness landscape metaphor and propose a new “scape” formed by interconnected layers, each layer containing the phenotypes viable in a given environment. Different phenotypes within a layer are accessible through mutations with selective value, while neutral mutations cause displacements of populations within a phenotype. A different environment is represented as a separated layer, where phenotypes may have new fitness values, other phenotypes may be viable, and the same genotype may yield a different phenotype, representing genotypic promiscuity. This scenario explicitly includes the many-to-many structure of the genotype-to-phenotype map. A number of empirical observations regarding the adaptation of populations in the light of adaptive multiscapes are reviewed. CONCLUSIONS: Several shortcomings of Wright’s visualization of fitness landscapes can be overcome through adaptive multiscapes. Relevant aspects of population adaptation, such as neutral drift, functional promiscuity or environment-dependent fitness, as well as entropic trapping and the concomitant impossibility to reach fitness peaks are visualized at once. Adaptive multiscapes should aid in the qualitative understanding of the multiple pathways involved in evolutionary dynamics. REVIEWERS: This article was reviewed by Eugene Koonin and Ricard Solé.
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spelling pubmed-53317432017-03-06 Adaptive multiscapes: an up-to-date metaphor to visualize molecular adaptation Catalán, Pablo Arias, Clemente F. Cuesta, Jose A. Manrubia, Susanna Biol Direct Opinion BACKGROUND: Wright’s metaphor of the fitness landscape has shaped and conditioned our view of the adaptation of populations for almost a century. Since its inception, and including criticism raised by Wright himself, the concept has been surrounded by controversy. Among others, the debate stems from the intrinsic difficulty to capture important features of the space of genotypes, such as its high dimensionality or the existence of abundant ridges, in a visually appealing two-dimensional picture. Two additional currently widespread observations come to further constrain the applicability of the original metaphor: the very skewed distribution of phenotype sizes (which may actively prevent, due to entropic effects, the achievement of fitness maxima), and functional promiscuity (i.e. the existence of secondary functions which entail partial adaptation to environments never encountered before by the population). RESULTS: Here we revise some of the shortcomings of the fitness landscape metaphor and propose a new “scape” formed by interconnected layers, each layer containing the phenotypes viable in a given environment. Different phenotypes within a layer are accessible through mutations with selective value, while neutral mutations cause displacements of populations within a phenotype. A different environment is represented as a separated layer, where phenotypes may have new fitness values, other phenotypes may be viable, and the same genotype may yield a different phenotype, representing genotypic promiscuity. This scenario explicitly includes the many-to-many structure of the genotype-to-phenotype map. A number of empirical observations regarding the adaptation of populations in the light of adaptive multiscapes are reviewed. CONCLUSIONS: Several shortcomings of Wright’s visualization of fitness landscapes can be overcome through adaptive multiscapes. Relevant aspects of population adaptation, such as neutral drift, functional promiscuity or environment-dependent fitness, as well as entropic trapping and the concomitant impossibility to reach fitness peaks are visualized at once. Adaptive multiscapes should aid in the qualitative understanding of the multiple pathways involved in evolutionary dynamics. REVIEWERS: This article was reviewed by Eugene Koonin and Ricard Solé. BioMed Central 2017-02-28 /pmc/articles/PMC5331743/ /pubmed/28245845 http://dx.doi.org/10.1186/s13062-017-0178-1 Text en © The Author(s) 2017 Open Access This article is distributed under the terms of the Creative Commons Attribution 4.0 International License (http://creativecommons.org/licenses/by/4.0/), which permits unrestricted use, distribution, and reproduction in any medium, provided you give appropriate credit to the original author(s) and the source, provide a link to the Creative Commons license, and indicate if changes were made. The Creative Commons Public Domain Dedication waiver(http://creativecommons.org/publicdomain/zero/1.0/) applies to the data made available in this article, unless otherwise stated.
spellingShingle Opinion
Catalán, Pablo
Arias, Clemente F.
Cuesta, Jose A.
Manrubia, Susanna
Adaptive multiscapes: an up-to-date metaphor to visualize molecular adaptation
title Adaptive multiscapes: an up-to-date metaphor to visualize molecular adaptation
title_full Adaptive multiscapes: an up-to-date metaphor to visualize molecular adaptation
title_fullStr Adaptive multiscapes: an up-to-date metaphor to visualize molecular adaptation
title_full_unstemmed Adaptive multiscapes: an up-to-date metaphor to visualize molecular adaptation
title_short Adaptive multiscapes: an up-to-date metaphor to visualize molecular adaptation
title_sort adaptive multiscapes: an up-to-date metaphor to visualize molecular adaptation
topic Opinion
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC5331743/
https://www.ncbi.nlm.nih.gov/pubmed/28245845
http://dx.doi.org/10.1186/s13062-017-0178-1
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